RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SIPA1L3O60292 1781 aaPredicted RBP33.55■■■□□ 2.96
LDB1-202ENST00000425280 PDE4AP27815 886 aa33.54■■■□□ 2.96
LDB1-202ENST00000425280 COL5A2P05997 1499 aaPredicted RBP33.54■■■□□ 2.96
LDB1-202ENST00000425280 KCNQ3O43525 872 aa33.53■■■□□ 2.96
LDB1-202ENST00000425280 PKD1L3Q7Z443 1732 aa33.53■■■□□ 2.96
LDB1-202ENST00000425280 PHKG2P15735 406 aa33.52■■■□□ 2.96
LDB1-202ENST00000425280 NECTIN2Q92692 538 aa33.51■■■□□ 2.96
LDB1-202ENST00000425280 CACNA1FO60840 1977 aa33.51■■■□□ 2.96
LDB1-202ENST00000425280 BACH2Q9BYV9 841 aa33.51■■■□□ 2.95
LDB1-202ENST00000425280 SCN11AQ9UI33 1791 aa33.5■■■□□ 2.95
LDB1-202ENST00000425280 PDZRN3Q9UPQ7 1066 aa33.49■■■□□ 2.95
LDB1-202ENST00000425280 KDM6AO15550 1401 aaPredicted RBP33.49■■■□□ 2.95
LDB1-202ENST00000425280 AHDC1Q5TGY3 1603 aaPredicted RBP33.49■■■□□ 2.95
LDB1-202ENST00000425280 HOXB7P09629 217 aa33.49■■■□□ 2.95
LDB1-202ENST00000425280 HDGFL1Q5TGJ6 251 aa33.48■■■□□ 2.95
LDB1-202ENST00000425280 TOM1L2Q6ZVM7 507 aa33.48■■■□□ 2.95
LDB1-202ENST00000425280 IFNL2Q8IZJ0 200 aa33.48■■■□□ 2.95
LDB1-202ENST00000425280 C1orf115Q9H7X2 142 aa33.47■■■□□ 2.95
LDB1-202ENST00000425280 FLIIQ13045 1269 aa33.46■■■□□ 2.95
LDB1-202ENST00000425280 CYP27B1O15528 508 aa33.44■■■□□ 2.94
LDB1-202ENST00000425280 PARP4Q9UKK3 1724 aaKnown RBP33.44■■■□□ 2.94
LDB1-202ENST00000425280 SMC5Q8IY18 1101 aa33.44■■■□□ 2.94
LDB1-202ENST00000425280 F6X3S4 739 aa33.43■■■□□ 2.94
LDB1-202ENST00000425280 SLC52A2Q9HAB3 445 aa33.42■■■□□ 2.94
LDB1-202ENST00000425280 CARD10Q9BWT7 1032 aa33.41■■■□□ 2.94
LDB1-202ENST00000425280 HEG1Q9ULI3 1381 aa33.41■■■□□ 2.94
LDB1-202ENST00000425280 EIF2S2P20042 333 aaKnown RBP33.4■■■□□ 2.94
LDB1-202ENST00000425280 FKBP5Q13451 457 aaPredicted RBP33.4■■■□□ 2.94
LDB1-202ENST00000425280 DCAF5Q96JK2 942 aa33.4■■■□□ 2.94
LDB1-202ENST00000425280 CHMP4AQ9BY43 222 aa33.4■■■□□ 2.94
LDB1-202ENST00000425280 STRN4Q9NRL3 753 aa33.4■■■□□ 2.94
LDB1-202ENST00000425280 LARP1Q6PKG0 1096 aaKnown RBP33.39■■■□□ 2.94
LDB1-202ENST00000425280 COL22A1Q8NFW1 1626 aaPredicted RBP33.39■■■□□ 2.94
LDB1-202ENST00000425280 CCT4P50991 539 aaKnown RBP33.38■■■□□ 2.93
LDB1-202ENST00000425280 SLC4A10Q6U841 1118 aa33.38■■■□□ 2.93
LDB1-202ENST00000425280 SIRT2Q8IXJ6 389 aa33.38■■■□□ 2.93
LDB1-202ENST00000425280 EVA1CP58658 441 aa33.38■■■□□ 2.93
LDB1-202ENST00000425280 MRC1P22897 1456 aa33.38■■■□□ 2.93
LDB1-202ENST00000425280 GIGYF1O75420 1035 aaPredicted RBP33.37■■■□□ 2.93
LDB1-202ENST00000425280 HSP90AB1P08238 724 aaKnown RBP33.37■■■□□ 2.93
LDB1-202ENST00000425280 FAM161AQ3B820 660 aa33.37■■■□□ 2.93
LDB1-202ENST00000425280 NFATC2IPQ8NCF5 419 aa33.35■■■□□ 2.93
LDB1-202ENST00000425280 CHPF2Q9P2E5 772 aa33.35■■■□□ 2.93
LDB1-202ENST00000425280 C8orf34Q49A92 452 aa33.35■■■□□ 2.93
LDB1-202ENST00000425280 ZCRB1Q8TBF4 217 aaKnown RBP33.35■■■□□ 2.93
LDB1-202ENST00000425280 MEIS3Q99687 375 aa33.35■■■□□ 2.93
LDB1-202ENST00000425280 PHAXQ9H814 394 aaKnown RBP33.35■■■□□ 2.93
LDB1-202ENST00000425280 IL2RBP14784 551 aa33.33■■■□□ 2.93
LDB1-202ENST00000425280 ZNF790Q6PG37 636 aa33.33■■■□□ 2.93
LDB1-202ENST00000425280 PCDH11XQ9BZA7 1347 aa33.32■■■□□ 2.93
LDB1-202ENST00000425280 PCDH11YQ9BZA8 1340 aa33.32■■■□□ 2.93
LDB1-202ENST00000425280 COL14A1Q05707 1796 aaKnown RBP33.32■■■□□ 2.92
LDB1-202ENST00000425280 N4BP2Q86UW6 1770 aaPredicted RBP33.32■■■□□ 2.92
LDB1-202ENST00000425280 ATP10DQ9P241 1426 aa33.32■■■□□ 2.92
LDB1-202ENST00000425280 SLC39A6Q13433 755 aa33.32■■■□□ 2.92
LDB1-202ENST00000425280 BTG4Q9NY30 223 aa33.31■■■□□ 2.92
LDB1-202ENST00000425280 PXDNLA1KZ92 1463 aa33.31■■■□□ 2.92
LDB1-202ENST00000425280 NUCB1Q02818 461 aa33.3■■■□□ 2.92
LDB1-202ENST00000425280 GCC1Q96CN9 775 aa33.3■■■□□ 2.92
LDB1-202ENST00000425280 PRAMEF22A3QJZ6 481 aa33.29■■■□□ 2.92
LDB1-202ENST00000425280 COL16A1Q07092 1604 aaPredicted RBP33.29■■■□□ 2.92
LDB1-202ENST00000425280 PHLPP1O60346 1717 aa33.29■■■□□ 2.92
LDB1-202ENST00000425280 ANKRD44Q8N8A2 993 aa33.28■■■□□ 2.92
LDB1-202ENST00000425280 DBF4Q9UBU7 674 aaPredicted RBP33.27■■■□□ 2.92
LDB1-202ENST00000425280 SHANK3Q9BYB0 1731 aa33.27■■■□□ 2.92
LDB1-202ENST00000425280 RPAP2Q8IXW5 612 aaPredicted RBP33.26■■■□□ 2.92
LDB1-202ENST00000425280 ANXA1P04083 346 aa33.25■■■□□ 2.91
LDB1-202ENST00000425280 CABP4P57796 275 aa33.25■■■□□ 2.91
LDB1-202ENST00000425280 CEP85Q6P2H3 762 aa33.25■■■□□ 2.91
LDB1-202ENST00000425280 C5P01031 1676 aa33.24■■■□□ 2.91
LDB1-202ENST00000425280 CHD1LQ86WJ1 897 aa33.24■■■□□ 2.91
LDB1-202ENST00000425280 NKX1-1Q15270 411 aaPredicted RBP33.22■■■□□ 2.91
LDB1-202ENST00000425280 ZNF496Q96IT1 587 aaPredicted RBP33.22■■■□□ 2.91
LDB1-202ENST00000425280 USP35Q9P2H5 1018 aa33.22■■■□□ 2.91
LDB1-202ENST00000425280 PROSER3Q2NL68 480 aa33.21■■■□□ 2.91
LDB1-202ENST00000425280 LNPKQ9C0E8 428 aa33.21■■■□□ 2.91
LDB1-202ENST00000425280 ANKRD45Q5TZF3 282 aa33.2■■■□□ 2.91
LDB1-202ENST00000425280 TTC5Q8N0Z6 440 aa33.2■■■□□ 2.91
LDB1-202ENST00000425280 TOM1O60784 492 aa33.19■■■□□ 2.9
LDB1-202ENST00000425280 DCTPP1Q9H773 170 aa33.19■■■□□ 2.9
LDB1-202ENST00000425280 GNAI3P08754 354 aa33.19■■■□□ 2.9
LDB1-202ENST00000425280 ANP32AP39687 249 aaKnown RBP33.19■■■□□ 2.9
LDB1-202ENST00000425280 DDX54Q8TDD1 881 aaKnown RBP33.19■■■□□ 2.9
LDB1-202ENST00000425280 PI4KAP2A4QPH2 592 aa33.18■■■□□ 2.9
LDB1-202ENST00000425280 GNAI2P04899 355 aa33.18■■■□□ 2.9
LDB1-202ENST00000425280 PI4KAP1Q8N8J0 262 aa33.18■■■□□ 2.9
LDB1-202ENST00000425280 ADCY9O60503 1353 aa33.18■■■□□ 2.9
LDB1-202ENST00000425280 ERVV-2B6SEH9 535 aa33.17■■■□□ 2.9
LDB1-202ENST00000425280 DNAAF4Q8WXU2 420 aa33.17■■■□□ 2.9
LDB1-202ENST00000425280 PIP4K2BP78356 416 aa33.17■■■□□ 2.9
LDB1-202ENST00000425280 HYPKQ9NX55 129 aa33.17■■■□□ 2.9
LDB1-202ENST00000425280 DDX21Q9NR30 783 aaKnown RBP eCLIP33.16■■■□□ 2.9
LDB1-202ENST00000425280 PDIA6Q15084 440 aa33.16■■■□□ 2.9
LDB1-202ENST00000425280 NPM2Q86SE8 214 aaKnown RBP33.16■■■□□ 2.9
LDB1-202ENST00000425280 FMNL2Q96PY5 1086 aa33.16■■■□□ 2.9
LDB1-202ENST00000425280 SRCIN1Q9C0H9 1055 aa33.15■■■□□ 2.9
LDB1-202ENST00000425280 USP44Q9H0E7 712 aa33.15■■■□□ 2.9
LDB1-202ENST00000425280 SNRPA1P09661 255 aaKnown RBP33.14■■■□□ 2.9
LDB1-202ENST00000425280 BEND3Q5T5X7 828 aa33.14■■■□□ 2.9
LDB1-202ENST00000425280 DISP2A7MBM2 1401 aa33.14■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms