RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CEP89Q96ST8 783 aa14.26□□□□□ -0.13
PTPRF-205ENST00000414879 MPRIPQ6WCQ1 1025 aa14.26□□□□□ -0.13
PTPRF-205ENST00000414879 MX1P20591 662 aa14.26□□□□□ -0.13
PTPRF-205ENST00000414879 FAM177BA6PVY3 158 aa14.26□□□□□ -0.13
PTPRF-205ENST00000414879 ALDH1L1O75891 902 aa14.26□□□□□ -0.13
PTPRF-205ENST00000414879 ZCRB1Q8TBF4 217 aaKnown RBP14.25□□□□□ -0.13
PTPRF-205ENST00000414879 POLKQ9UBT6 870 aa14.25□□□□□ -0.13
PTPRF-205ENST00000414879 IFIT5Q13325 482 aaKnown RBP14.25□□□□□ -0.13
PTPRF-205ENST00000414879 BLOC1S2Q6QNY1 142 aa14.25□□□□□ -0.13
PTPRF-205ENST00000414879 LRRC59Q96AG4 307 aaKnown RBP14.25□□□□□ -0.13
PTPRF-205ENST00000414879 THUMPD2Q9BTF0 503 aaKnown RBP14.25□□□□□ -0.13
PTPRF-205ENST00000414879 WDR33Q9C0J8 1336 aaKnown RBP14.25□□□□□ -0.13
PTPRF-205ENST00000414879 IPO7O95373 1038 aaKnown RBP14.25□□□□□ -0.13
PTPRF-205ENST00000414879 MBIPQ9NS73 344 aa14.25□□□□□ -0.13
PTPRF-205ENST00000414879 CAVIN4Q5BKX8 364 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 WASF1Q92558 559 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 SIL1Q9H173 461 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 A0A1W2PP64 1363 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 METTL24Q5JXM2 366 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 RAD21O60216 631 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 PIP4K2AP48426 406 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-205ENST00000414879 DCTN1Q14203 1278 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 SLF2Q8IX21 1173 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 CCDC43Q96MW1 224 aaKnown RBP14.24□□□□□ -0.13
PTPRF-205ENST00000414879 MYD88Q99836 296 aa14.24□□□□□ -0.13
PTPRF-205ENST00000414879 PTCD1O75127 700 aaKnown RBP14.23□□□□□ -0.13
PTPRF-205ENST00000414879 IP6K1Q92551 441 aa14.23□□□□□ -0.13
PTPRF-205ENST00000414879 ANKRD18BA2A2Z9 1011 aa14.23□□□□□ -0.13
PTPRF-205ENST00000414879 K7ELQ4 463 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-205ENST00000414879 HMGB1P09429 215 aaKnown RBP14.23□□□□□ -0.13
PTPRF-205ENST00000414879 TXLNAP40222 546 aa14.23□□□□□ -0.13
PTPRF-205ENST00000414879 PPP1R42Q7Z4L9 355 aa14.23□□□□□ -0.13
PTPRF-205ENST00000414879 USHBP1Q8N6Y0 703 aa14.23□□□□□ -0.13
PTPRF-205ENST00000414879 TRIM27P14373 513 aa14.23□□□□□ -0.13
PTPRF-205ENST00000414879 CWC25Q9NXE8 425 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-205ENST00000414879 EIF4A2Q14240 407 aaKnown RBP14.22□□□□□ -0.13
PTPRF-205ENST00000414879 U3KPZ7 1027 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-205ENST00000414879 SBNO1A3KN83 1393 aa14.22□□□□□ -0.13
PTPRF-205ENST00000414879 HSP90AB2PQ58FF8 381 aa14.22□□□□□ -0.13
PTPRF-205ENST00000414879 SLC5A1P13866 664 aa14.22□□□□□ -0.13
PTPRF-205ENST00000414879 SLC4A3P48751 1232 aa14.22□□□□□ -0.13
PTPRF-205ENST00000414879 CDC5LQ99459 802 aaKnown RBP14.22□□□□□ -0.13
PTPRF-205ENST00000414879 MYOM2P54296 1465 aa14.21□□□□□ -0.13
PTPRF-205ENST00000414879 ARHGEF10O15013 1369 aa14.21□□□□□ -0.13
PTPRF-205ENST00000414879 PLEKHG3A1L390 1219 aa14.21□□□□□ -0.13
PTPRF-205ENST00000414879 IMMTQ16891 758 aaKnown RBP14.21□□□□□ -0.13
PTPRF-205ENST00000414879 HDAC1Q13547 482 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-205ENST00000414879 TTF1Q15361 905 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-205ENST00000414879 ADAMTS2O95450 1211 aa14.21□□□□□ -0.13
PTPRF-205ENST00000414879 OLFM4Q6UX06 510 aa14.21□□□□□ -0.13
PTPRF-205ENST00000414879 MIS18AQ9NYP9 233 aa14.21□□□□□ -0.13
PTPRF-205ENST00000414879 CCDC69A6NI79 296 aa14.21□□□□□ -0.14
PTPRF-205ENST00000414879 HOXB7P09629 217 aa14.21□□□□□ -0.14
PTPRF-205ENST00000414879 PER1O15534 1290 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-205ENST00000414879 FKBP4Q02790 459 aaKnown RBP eCLIP14.2□□□□□ -0.14
PTPRF-205ENST00000414879 LRP2BPQ9P2M1 347 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 TRMT112Q9UI30 125 aaKnown RBP14.2□□□□□ -0.14
PTPRF-205ENST00000414879 HECW2Q9P2P5 1572 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 MAP3K5Q99683 1374 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 IL2RBP14784 551 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 DCAF5Q96JK2 942 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 GCP02774 474 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 MAP3K12Q12852 859 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 TMOD2Q9NZR1 351 aa14.2□□□□□ -0.14
PTPRF-205ENST00000414879 INO80Q9ULG1 1556 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-205ENST00000414879 PES1O00541 588 aaKnown RBP14.19□□□□□ -0.14
PTPRF-205ENST00000414879 KINO60870 393 aaKnown RBP14.19□□□□□ -0.14
PTPRF-205ENST00000414879 CREBRFQ8IUR6 639 aa14.19□□□□□ -0.14
PTPRF-205ENST00000414879 AIDAQ96BJ3 306 aa14.19□□□□□ -0.14
PTPRF-205ENST00000414879 NLRP1Q9C000 1473 aa14.19□□□□□ -0.14
PTPRF-205ENST00000414879 UBAC1Q9BSL1 405 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 NOL7Q9UMY1 257 aaKnown RBP14.18□□□□□ -0.14
PTPRF-205ENST00000414879 ANKRD13DQ6ZTN6 518 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 EVI5LQ96CN4 794 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 PDRG1Q9NUG6 133 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 RAI14Q9P0K7 980 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 EXOC6BQ9Y2D4 811 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 TDO2P48775 406 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 BMP2KLQ5H9B9 411 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 SDF4Q9BRK5 362 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 SH2B1Q9NRF2 756 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-205ENST00000414879 CCDC70Q6NSX1 233 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 IL1RAPL2Q9NP60 686 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 ECHDC1Q9NTX5 307 aa14.18□□□□□ -0.14
PTPRF-205ENST00000414879 CCDC196A0A1B0GTZ2 297 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 RNF41Q9H4P4 317 aaPredicted RBP14.17□□□□□ -0.14
PTPRF-205ENST00000414879 EFCAB6Q5THR3 1501 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 CFAP45Q9UL16 551 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 MAP3K2Q9Y2U5 619 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 LRRFIP2Q9Y608 721 aaKnown RBP14.17□□□□□ -0.14
PTPRF-205ENST00000414879 PLEKHG1Q9ULL1 1385 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 MRE11P49959 708 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 KRT85P78386 507 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 TET3O43151 1660 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 PCDH11XQ9BZA7 1347 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 PCDH11YQ9BZA8 1340 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 LDHCP07864 332 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 UQCRFS1P1P0C7P4 283 aa14.17□□□□□ -0.14
PTPRF-205ENST00000414879 IKQ13123 557 aaPredicted RBP14.16□□□□□ -0.14
PTPRF-205ENST00000414879 KLHL34Q8N239 644 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms