RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 KLHL40Q2TBA0 621 aa25.29■■□□□ 1.64
CLK3-202ENST00000395066 CAVIN1Q6NZI2 390 aaKnown RBP25.29■■□□□ 1.64
CLK3-202ENST00000395066 NOL8Q76FK4 1167 aaKnown RBP25.29■■□□□ 1.64
CLK3-202ENST00000395066 STK31Q9BXU1 1019 aa25.29■■□□□ 1.64
CLK3-202ENST00000395066 FLIIQ13045 1269 aa25.28■■□□□ 1.64
CLK3-202ENST00000395066 GLIPR1L2Q4G1C9 344 aa25.28■■□□□ 1.64
CLK3-202ENST00000395066 RRP9O43818 475 aaKnown RBP25.28■■□□□ 1.64
CLK3-202ENST00000395066 CCDC173Q0VFZ6 552 aa25.27■■□□□ 1.64
CLK3-202ENST00000395066 ZDHHC9Q9Y397 364 aa25.27■■□□□ 1.64
CLK3-202ENST00000395066 SBNO1A3KN83 1393 aa25.27■■□□□ 1.64
CLK3-202ENST00000395066 RGPD8O14715 1765 aaPredicted RBP25.27■■□□□ 1.64
CLK3-202ENST00000395066 FMN2Q9NZ56 1722 aa25.26■■□□□ 1.63
CLK3-202ENST00000395066 PLEKHG1Q9ULL1 1385 aa25.26■■□□□ 1.63
CLK3-202ENST00000395066 NASPP49321 788 aaPredicted RBP25.26■■□□□ 1.63
CLK3-202ENST00000395066 NLRP6P59044 892 aa25.26■■□□□ 1.63
CLK3-202ENST00000395066 NUCB2P80303 420 aa25.26■■□□□ 1.63
CLK3-202ENST00000395066 LMBRD1Q9NUN5 540 aa25.26■■□□□ 1.63
CLK3-202ENST00000395066 IBTKQ9P2D0 1353 aaPredicted RBP25.25■■□□□ 1.63
CLK3-202ENST00000395066 IGSF1Q8N6C5 1336 aa25.25■■□□□ 1.63
CLK3-202ENST00000395066 RILPL2Q969X0 211 aa25.25■■□□□ 1.63
CLK3-202ENST00000395066 PALD1Q9ULE6 856 aa25.25■■□□□ 1.63
CLK3-202ENST00000395066 NEK4P51957 841 aa25.25■■□□□ 1.63
CLK3-202ENST00000395066 USHBP1Q8N6Y0 703 aa25.25■■□□□ 1.63
CLK3-202ENST00000395066 KDRP35968 1356 aa25.24■■□□□ 1.63
CLK3-202ENST00000395066 PRPF40AO75400 957 aaKnown RBP25.24■■□□□ 1.63
CLK3-202ENST00000395066 PPP1R9BQ96SB3 815 aa25.24■■□□□ 1.63
CLK3-202ENST00000395066 RBM27Q9P2N5 1060 aaKnown RBP25.24■■□□□ 1.63
CLK3-202ENST00000395066 LRRFIP2Q9Y608 721 aaKnown RBP25.24■■□□□ 1.63
CLK3-202ENST00000395066 TRIM6-TRIM34B2RNG4 842 aa25.24■■□□□ 1.63
CLK3-202ENST00000395066 LRRCC1Q9C099 1032 aa25.23■■□□□ 1.63
CLK3-202ENST00000395066 OSBPL3Q9H4L5 887 aa25.23■■□□□ 1.63
CLK3-202ENST00000395066 UNC5CLQ8IV45 518 aa25.23■■□□□ 1.63
CLK3-202ENST00000395066 TTC21AQ8NDW8 1320 aa25.22■■□□□ 1.63
CLK3-202ENST00000395066 MX1P20591 662 aa25.22■■□□□ 1.63
CLK3-202ENST00000395066 IL17REQ8NFR9 667 aa25.22■■□□□ 1.63
CLK3-202ENST00000395066 SALL3Q9BXA9 1300 aa25.22■■□□□ 1.63
CLK3-202ENST00000395066 ANP32BQ92688 251 aaKnown RBP25.21■■□□□ 1.63
CLK3-202ENST00000395066 IL1RAPL2Q9NP60 686 aa25.21■■□□□ 1.63
CLK3-202ENST00000395066 GNAT3A8MTJ3 354 aa25.21■■□□□ 1.63
CLK3-202ENST00000395066 ESYT1Q9BSJ8 1104 aa25.21■■□□□ 1.63
CLK3-202ENST00000395066 ZSCAN23Q3MJ62 389 aa25.2■■□□□ 1.63
CLK3-202ENST00000395066 CCDC30Q5VVM6 783 aa25.2■■□□□ 1.62
CLK3-202ENST00000395066 GPT2Q8TD30 523 aa25.2■■□□□ 1.62
CLK3-202ENST00000395066 ANO2Q9NQ90 1003 aa25.2■■□□□ 1.62
CLK3-202ENST00000395066 TMX3Q96JJ7 454 aa25.19■■□□□ 1.62
CLK3-202ENST00000395066 PHAXQ9H814 394 aaKnown RBP25.19■■□□□ 1.62
CLK3-202ENST00000395066 EID1Q9Y6B2 187 aa25.19■■□□□ 1.62
CLK3-202ENST00000395066 IL25Q9H293 177 aa25.19■■□□□ 1.62
CLK3-202ENST00000395066 NSFL1CQ9UNZ2 370 aaKnown RBP25.19■■□□□ 1.62
CLK3-202ENST00000395066 MAP4K4O95819 1239 aaPredicted RBP25.18■■□□□ 1.62
CLK3-202ENST00000395066 CWC22Q9HCG8 908 aaKnown RBP25.18■■□□□ 1.62
CLK3-202ENST00000395066 PIK3C2AO00443 1686 aa25.18■■□□□ 1.62
CLK3-202ENST00000395066 HOXC9P31274 260 aa25.18■■□□□ 1.62
CLK3-202ENST00000395066 ATP8B2P98198 1209 aa25.18■■□□□ 1.62
CLK3-202ENST00000395066 C14orf37Q86TY3 774 aa25.18■■□□□ 1.62
CLK3-202ENST00000395066 TPM2P07951 284 aa25.17■■□□□ 1.62
CLK3-202ENST00000395066 ZSCAN30Q86W11 494 aa25.17■■□□□ 1.62
CLK3-202ENST00000395066 KIF13AQ9H1H9 1805 aa25.17■■□□□ 1.62
CLK3-202ENST00000395066 GNAI3P08754 354 aa25.16■■□□□ 1.62
CLK3-202ENST00000395066 CHMLP26374 656 aa25.16■■□□□ 1.62
CLK3-202ENST00000395066 NUTM1Q86Y26 1132 aa25.16■■□□□ 1.62
CLK3-202ENST00000395066 UPF3BQ9BZI7 483 aaKnown RBP25.16■■□□□ 1.62
CLK3-202ENST00000395066 USP44Q9H0E7 712 aa25.16■■□□□ 1.62
CLK3-202ENST00000395066 ZNF445P59923 1031 aa25.16■■□□□ 1.62
CLK3-202ENST00000395066 FOXD4L6Q3SYB3 417 aaPredicted RBP25.16■■□□□ 1.62
CLK3-202ENST00000395066 FOXD4L3Q6VB84 417 aaPredicted RBP25.16■■□□□ 1.62
CLK3-202ENST00000395066 DIP2AQ14689 1571 aa25.15■■□□□ 1.62
CLK3-202ENST00000395066 RBSNQ9H1K0 784 aa25.15■■□□□ 1.62
CLK3-202ENST00000395066 FAM208AQ9UK61 1670 aaKnown RBP25.14■■□□□ 1.62
CLK3-202ENST00000395066 EIF2S2P20042 333 aaKnown RBP25.14■■□□□ 1.62
CLK3-202ENST00000395066 PRIM1P49642 420 aaKnown RBP25.14■■□□□ 1.62
CLK3-202ENST00000395066 XRN1Q8IZH2 1706 aaKnown RBP25.14■■□□□ 1.61
CLK3-202ENST00000395066 ABTB2Q8N961 1025 aa25.13■■□□□ 1.61
CLK3-202ENST00000395066 PLEKHG5O94827 1062 aa25.13■■□□□ 1.61
CLK3-202ENST00000395066 HDGFL1Q5TGJ6 251 aa25.13■■□□□ 1.61
CLK3-202ENST00000395066 RBM33Q96EV2 1170 aaKnown RBP25.13■■□□□ 1.61
CLK3-202ENST00000395066 UBTFL1P0CB47 393 aaPredicted RBP25.12■■□□□ 1.61
CLK3-202ENST00000395066 MAP3K5Q99683 1374 aa25.12■■□□□ 1.61
CLK3-202ENST00000395066 ZBTB7CA1YPR0 619 aa25.11■■□□□ 1.61
CLK3-202ENST00000395066 TAF7Q15545 349 aaPredicted RBP25.11■■□□□ 1.61
CLK3-202ENST00000395066 TMEM63CQ9P1W3 806 aa25.11■■□□□ 1.61
CLK3-202ENST00000395066 KIAA1211Q6ZU35 1233 aa25.11■■□□□ 1.61
CLK3-202ENST00000395066 TUBGCP6Q96RT7 1819 aa25.1■■□□□ 1.61
CLK3-202ENST00000395066 ANXA1P04083 346 aa25.1■■□□□ 1.61
CLK3-202ENST00000395066 MSNP26038 577 aaKnown RBP25.1■■□□□ 1.61
CLK3-202ENST00000395066 KCNA6P17658 529 aa25.1■■□□□ 1.61
CLK3-202ENST00000395066 NWD1Q149M9 1564 aa25.09■■□□□ 1.61
CLK3-202ENST00000395066 LRRC37A3O60309 1634 aa25.09■■□□□ 1.61
CLK3-202ENST00000395066 PPP1R42Q7Z4L9 355 aa25.09■■□□□ 1.61
CLK3-202ENST00000395066 SYCE3A1L190 88 aa25.08■■□□□ 1.61
CLK3-202ENST00000395066 HTATSF1O43719 755 aaKnown RBP25.08■■□□□ 1.61
CLK3-202ENST00000395066 SURF6O75683 361 aaKnown RBP25.08■■□□□ 1.61
CLK3-202ENST00000395066 TBX22Q9Y458 520 aa25.08■■□□□ 1.61
CLK3-202ENST00000395066 SETD1BQ9UPS6 1966 aaKnown RBP25.08■■□□□ 1.61
CLK3-202ENST00000395066 NBPF7P0C2Y1 421 aaPredicted RBP25.07■■□□□ 1.6
CLK3-202ENST00000395066 LGR6Q9HBX8 967 aa25.07■■□□□ 1.6
CLK3-202ENST00000395066 KCNQ3O43525 872 aa25.07■■□□□ 1.6
CLK3-202ENST00000395066 OFD1O75665 1012 aa25.07■■□□□ 1.6
CLK3-202ENST00000395066 MCCP23508 829 aa25.07■■□□□ 1.6
CLK3-202ENST00000395066 VSIG10Q8N0Z9 540 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms