RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MIS18AQ9NYP9 233 aa23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 BTBD11A6QL63 1104 aa23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 HOXB7P09629 217 aa23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 LARP1Q6PKG0 1096 aaKnown RBP23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 ZCRB1Q8TBF4 217 aaKnown RBP23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 SIPA1L3O60292 1781 aaPredicted RBP23.14■■□□□ 1.3
CCDC88C-203ENST00000389856 TRIM27P14373 513 aa23.14■■□□□ 1.29
CCDC88C-203ENST00000389856 STK31Q9BXU1 1019 aa23.14■■□□□ 1.29
CCDC88C-203ENST00000389856 COG6Q9Y2V7 657 aa23.14■■□□□ 1.29
CCDC88C-203ENST00000389856 PLCH1Q4KWH8 1693 aa23.13■■□□□ 1.29
CCDC88C-203ENST00000389856 MVPQ14764 893 aaKnown RBP23.13■■□□□ 1.29
CCDC88C-203ENST00000389856 DDX19BQ9UMR2 479 aa23.13■■□□□ 1.29
CCDC88C-203ENST00000389856 JCADQ9P266 1359 aa23.13■■□□□ 1.29
CCDC88C-203ENST00000389856 CACNA1FO60840 1977 aa23.13■■□□□ 1.29
CCDC88C-203ENST00000389856 CCDC30Q5VVM6 783 aa23.12■■□□□ 1.29
CCDC88C-203ENST00000389856 PTPRCP08575 1304 aa23.12■■□□□ 1.29
CCDC88C-203ENST00000389856 NWD2Q9ULI1 1742 aa23.11■■□□□ 1.29
CCDC88C-203ENST00000389856 CLUAP1Q96AJ1 413 aa23.11■■□□□ 1.29
CCDC88C-203ENST00000389856 MRC1P22897 1456 aa23.09■■□□□ 1.29
CCDC88C-203ENST00000389856 CENPQQ7L2Z9 268 aaPredicted RBP23.09■■□□□ 1.29
CCDC88C-203ENST00000389856 SLC52A2Q9HAB3 445 aa23.09■■□□□ 1.29
CCDC88C-203ENST00000389856 CDCA7Q9BWT1 371 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-203ENST00000389856 KDM6AO15550 1401 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-203ENST00000389856 RLBP1P12271 317 aa23.08■■□□□ 1.28
CCDC88C-203ENST00000389856 EIF4A1P60842 406 aaKnown RBP23.08■■□□□ 1.28
CCDC88C-203ENST00000389856 KRT24Q2M2I5 525 aa23.08■■□□□ 1.28
CCDC88C-203ENST00000389856 ITPRIPQ8IWB1 547 aa23.08■■□□□ 1.28
CCDC88C-203ENST00000389856 CYP27B1O15528 508 aa23.07■■□□□ 1.28
CCDC88C-203ENST00000389856 ADAMTS2O95450 1211 aa23.07■■□□□ 1.28
CCDC88C-203ENST00000389856 NRAPQ86VF7 1730 aa23.06■■□□□ 1.28
CCDC88C-203ENST00000389856 NUTM2BA6NNL0 878 aaPredicted RBP23.05■■□□□ 1.28
CCDC88C-203ENST00000389856 NUTM2EB1AL46 878 aaPredicted RBP23.05■■□□□ 1.28
CCDC88C-203ENST00000389856 NUTM2AQ8IVF1 878 aaPredicted RBP23.05■■□□□ 1.28
CCDC88C-203ENST00000389856 KDM2BQ8NHM5 1336 aa23.05■■□□□ 1.28
CCDC88C-203ENST00000389856 SLC4A2P04920 1241 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 CABP4P57796 275 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 THRAP3Q9Y2W1 955 aaKnown RBP23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 ABCC4O15439 1325 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 SPATA31A6Q5VVP1 1343 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 WNK3Q9BYP7 1800 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 ERVV-2B6SEH9 535 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 NKX1-1Q15270 411 aaPredicted RBP23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 HDGFL1Q5TGJ6 251 aa23.04■■□□□ 1.28
CCDC88C-203ENST00000389856 MSH5O43196 834 aa23.03■■□□□ 1.28
CCDC88C-203ENST00000389856 ANP32AP39687 249 aaKnown RBP23.03■■□□□ 1.28
CCDC88C-203ENST00000389856 TMEM57Q8N5G2 664 aa23.03■■□□□ 1.28
CCDC88C-203ENST00000389856 TTC5Q8N0Z6 440 aa23.02■■□□□ 1.28
CCDC88C-203ENST00000389856 USP35Q9P2H5 1018 aa23.02■■□□□ 1.28
CCDC88C-203ENST00000389856 TNNQ9UQP3 1299 aa23.02■■□□□ 1.28
CCDC88C-203ENST00000389856 SHANK3Q9BYB0 1731 aa23.02■■□□□ 1.28
CCDC88C-203ENST00000389856 DISP2A7MBM2 1401 aa23.01■■□□□ 1.27
CCDC88C-203ENST00000389856 ERICH6Q7L0X2 663 aa23■■□□□ 1.27
CCDC88C-203ENST00000389856 SLIT2O94813 1529 aa23■■□□□ 1.27
CCDC88C-203ENST00000389856 ZNF790Q6PG37 636 aa23■■□□□ 1.27
CCDC88C-203ENST00000389856 NFATC2IPQ8NCF5 419 aa23■■□□□ 1.27
CCDC88C-203ENST00000389856 HEG1Q9ULI3 1381 aa22.98■■□□□ 1.27
CCDC88C-203ENST00000389856 DDX54Q8TDD1 881 aaKnown RBP22.98■■□□□ 1.27
CCDC88C-203ENST00000389856 RWDD1Q9H446 243 aaPredicted RBP22.98■■□□□ 1.27
CCDC88C-203ENST00000389856 SPATA31A1Q5TZJ5 1347 aa22.97■■□□□ 1.27
CCDC88C-203ENST00000389856 EXOC5O00471 708 aa22.97■■□□□ 1.27
CCDC88C-203ENST00000389856 GIGYF1O75420 1035 aaPredicted RBP22.97■■□□□ 1.27
CCDC88C-203ENST00000389856 INTS3Q68E01 1043 aaKnown RBP22.97■■□□□ 1.27
CCDC88C-203ENST00000389856 FMNL2Q96PY5 1086 aa22.96■■□□□ 1.27
CCDC88C-203ENST00000389856 BACH2Q9BYV9 841 aa22.96■■□□□ 1.27
CCDC88C-203ENST00000389856 LRP6O75581 1613 aa22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 KCNQ3O43525 872 aa22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 PDE4AP27815 886 aa22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 CCT4P50991 539 aaKnown RBP22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 FLIIQ13045 1269 aa22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 DBF4Q9UBU7 674 aaPredicted RBP22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 TNS2Q63HR2 1409 aa22.95■■□□□ 1.26
CCDC88C-203ENST00000389856 EIF2S2P20042 333 aaKnown RBP22.94■■□□□ 1.26
CCDC88C-203ENST00000389856 ZBTB40Q9NUA8 1239 aa22.94■■□□□ 1.26
CCDC88C-203ENST00000389856 SPATA31A5Q5VU36 1347 aa22.94■■□□□ 1.26
CCDC88C-203ENST00000389856 SPATA31A7Q8IWB4 1347 aa22.94■■□□□ 1.26
CCDC88C-203ENST00000389856 FKBP5Q13451 457 aaPredicted RBP22.93■■□□□ 1.26
CCDC88C-203ENST00000389856 UNC5CLQ8IV45 518 aa22.93■■□□□ 1.26
CCDC88C-203ENST00000389856 NGLY1Q96IV0 654 aa22.93■■□□□ 1.26
CCDC88C-203ENST00000389856 PXDNLA1KZ92 1463 aa22.93■■□□□ 1.26
CCDC88C-203ENST00000389856 RGS12O14924 1447 aa22.93■■□□□ 1.26
CCDC88C-203ENST00000389856 SNRPA1P09661 255 aaKnown RBP22.92■■□□□ 1.26
CCDC88C-203ENST00000389856 BARGINQ6ZT62 677 aa22.92■■□□□ 1.26
CCDC88C-203ENST00000389856 NECTIN2Q92692 538 aa22.92■■□□□ 1.26
CCDC88C-203ENST00000389856 IPO9Q96P70 1041 aaKnown RBP22.92■■□□□ 1.26
CCDC88C-203ENST00000389856 CCDC9Q9Y3X0 531 aaKnown RBP22.92■■□□□ 1.26
CCDC88C-203ENST00000389856 HYPKQ9NX55 129 aa22.91■■□□□ 1.26
CCDC88C-203ENST00000389856 TMOD3Q9NYL9 352 aa22.91■■□□□ 1.26
CCDC88C-203ENST00000389856 N4BP2Q86UW6 1770 aaPredicted RBP22.9■■□□□ 1.26
CCDC88C-203ENST00000389856 ZBTB7BO15156 539 aaPredicted RBP22.9■■□□□ 1.26
CCDC88C-203ENST00000389856 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.9■■□□□ 1.26
CCDC88C-203ENST00000389856 PAPPAQ13219 1627 aa22.9■■□□□ 1.26
CCDC88C-203ENST00000389856 SLC39A6Q13433 755 aa22.9■■□□□ 1.26
CCDC88C-203ENST00000389856 C8orf37Q96NL8 207 aa22.9■■□□□ 1.26
CCDC88C-203ENST00000389856 LAMB4A4D0S4 1761 aa22.89■■□□□ 1.26
CCDC88C-203ENST00000389856 UBR2Q8IWV8 1755 aa22.89■■□□□ 1.25
CCDC88C-203ENST00000389856 HDAC1Q13547 482 aaPredicted RBP22.89■■□□□ 1.25
CCDC88C-203ENST00000389856 DDB1Q16531 1140 aa22.89■■□□□ 1.25
CCDC88C-203ENST00000389856 G2E3Q7L622 706 aa22.89■■□□□ 1.25
CCDC88C-203ENST00000389856 CHPF2Q9P2E5 772 aa22.89■■□□□ 1.25
CCDC88C-203ENST00000389856 NOP58Q9Y2X3 529 aaKnown RBP22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms