RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 C8orf58Q8NAV2 365 aa20.61■□□□□ 0.89
PTPRU-202ENST00000373779 MARCH6O60337 910 aa20.61■□□□□ 0.89
PTPRU-202ENST00000373779 DHX8Q14562 1220 aaKnown RBP20.61■□□□□ 0.89
PTPRU-202ENST00000373779 TSHZ3Q63HK5 1081 aa20.61■□□□□ 0.89
PTPRU-202ENST00000373779 MEIS3Q99687 375 aa20.61■□□□□ 0.89
PTPRU-202ENST00000373779 PCMTD1Q96MG8 357 aaPredicted RBP20.6■□□□□ 0.89
PTPRU-202ENST00000373779 PDCL3Q9H2J4 239 aa20.6■□□□□ 0.89
PTPRU-202ENST00000373779 KDM4AO75164 1064 aa20.6■□□□□ 0.89
PTPRU-202ENST00000373779 THEMISQ8N1K5 641 aaPredicted RBP20.6■□□□□ 0.89
PTPRU-202ENST00000373779 CCDC47Q96A33 483 aaKnown RBP20.6■□□□□ 0.89
PTPRU-202ENST00000373779 TATP17735 454 aaPredicted RBP20.59■□□□□ 0.89
PTPRU-202ENST00000373779 VAMP4O75379 141 aa20.59■□□□□ 0.89
PTPRU-202ENST00000373779 CCDC158Q5M9N0 1113 aa20.59■□□□□ 0.89
PTPRU-202ENST00000373779 CEP57L1Q8IYX8 460 aa20.59■□□□□ 0.89
PTPRU-202ENST00000373779 CLSTN1O94985 981 aa20.59■□□□□ 0.89
PTPRU-202ENST00000373779 DENND4BO75064 1496 aaPredicted RBP20.59■□□□□ 0.89
PTPRU-202ENST00000373779 TTC39AQ5SRH9 613 aa20.59■□□□□ 0.89
PTPRU-202ENST00000373779 JMYQ8N9B5 988 aa20.58■□□□□ 0.89
PTPRU-202ENST00000373779 SCAND2PQ9GZW5 306 aaPredicted RBP20.58■□□□□ 0.89
PTPRU-202ENST00000373779 TBC1D2BQ9UPU7 963 aa20.58■□□□□ 0.89
PTPRU-202ENST00000373779 STX6O43752 255 aa20.57■□□□□ 0.88
PTPRU-202ENST00000373779 PDE1AP54750 535 aa20.57■□□□□ 0.88
PTPRU-202ENST00000373779 DNAAF4Q8WXU2 420 aa20.57■□□□□ 0.88
PTPRU-202ENST00000373779 RBM25P49756 843 aaKnown RBP20.57■□□□□ 0.88
PTPRU-202ENST00000373779 C16orf71Q8IYS4 520 aaPredicted RBP20.57■□□□□ 0.88
PTPRU-202ENST00000373779 A0A1W2PP64 1363 aa20.57■□□□□ 0.88
PTPRU-202ENST00000373779 PDCL2Q8N4E4 241 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 TSPYL6Q8N831 410 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 POLKQ9UBT6 870 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 ATF3P18847 181 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 DDX11Q96FC9 970 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 DCTPP1Q9H773 170 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 SERPINC1P01008 464 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 XBP1P17861 261 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 DDX54Q8TDD1 881 aaKnown RBP20.56■□□□□ 0.88
PTPRU-202ENST00000373779 SART3Q15020 963 aaKnown RBP20.56■□□□□ 0.88
PTPRU-202ENST00000373779 VPS37DQ86XT2 251 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 LARP6Q9BRS8 491 aaKnown RBP20.56■□□□□ 0.88
PTPRU-202ENST00000373779 SPG7Q9UQ90 795 aa20.56■□□□□ 0.88
PTPRU-202ENST00000373779 UVSSAQ2YD98 709 aa20.55■□□□□ 0.88
PTPRU-202ENST00000373779 FILIP1Q7Z7B0 1213 aa20.55■□□□□ 0.88
PTPRU-202ENST00000373779 ZFYVE9O95405 1425 aa20.55■□□□□ 0.88
PTPRU-202ENST00000373779 BRMS1Q9HCU9 246 aa20.55■□□□□ 0.88
PTPRU-202ENST00000373779 ADCY5O95622 1261 aa20.55■□□□□ 0.88
PTPRU-202ENST00000373779 CCDC66A2RUB6 948 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 ESYT1Q9BSJ8 1104 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 GJB2P29033 226 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 ACBD3Q9H3P7 528 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 BOLA2Q9H3K6 86 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 UBE2HP62256 183 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 AMOTL1Q8IY63 956 aa20.54■□□□□ 0.88
PTPRU-202ENST00000373779 PLEKHM2Q8IWE5 1019 aa20.53■□□□□ 0.88
PTPRU-202ENST00000373779 ZNF518AQ6AHZ1 1483 aa20.53■□□□□ 0.88
PTPRU-202ENST00000373779 ANAPC15P60006 121 aa20.53■□□□□ 0.88
PTPRU-202ENST00000373779 SYTL4Q96C24 671 aaPredicted RBP20.53■□□□□ 0.88
PTPRU-202ENST00000373779 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.53■□□□□ 0.88
PTPRU-202ENST00000373779 ARHGEF5Q12774 1597 aa20.53■□□□□ 0.88
PTPRU-202ENST00000373779 PIK3R4Q99570 1358 aa20.53■□□□□ 0.88
PTPRU-202ENST00000373779 ZBTB7BO15156 539 aaPredicted RBP20.52■□□□□ 0.88
PTPRU-202ENST00000373779 USHBP1Q8N6Y0 703 aa20.52■□□□□ 0.88
PTPRU-202ENST00000373779 ATP2B1P20020 1258 aa20.52■□□□□ 0.88
PTPRU-202ENST00000373779 HSP90B2PQ58FF3 399 aa20.52■□□□□ 0.88
PTPRU-202ENST00000373779 PPP1R42Q7Z4L9 355 aa20.52■□□□□ 0.88
PTPRU-202ENST00000373779 CABP4P57796 275 aa20.52■□□□□ 0.87
PTPRU-202ENST00000373779 ABCC10Q5T3U5 1492 aa20.52■□□□□ 0.87
PTPRU-202ENST00000373779 CEP85Q6P2H3 762 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 ECHDC1Q9NTX5 307 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 WDR7Q9Y4E6 1490 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 EVI5LQ96CN4 794 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 CTNNA3Q9UI47 895 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 PPIP5K1Q6PFW1 1433 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 KIF6Q6ZMV9 814 aa20.51■□□□□ 0.87
PTPRU-202ENST00000373779 MAGI2Q86UL8 1455 aa20.5■□□□□ 0.87
PTPRU-202ENST00000373779 CBFA2T2O43439 604 aa20.5■□□□□ 0.87
PTPRU-202ENST00000373779 PHACTR3Q96KR7 559 aa20.5■□□□□ 0.87
PTPRU-202ENST00000373779 CCDC8Q9H0W5 538 aaPredicted RBP20.5■□□□□ 0.87
PTPRU-202ENST00000373779 RRAGDQ9NQL2 400 aaPredicted RBP20.5■□□□□ 0.87
PTPRU-202ENST00000373779 ZSCAN22P10073 491 aaPredicted RBP20.5■□□□□ 0.87
PTPRU-202ENST00000373779 PRIM1P49642 420 aaKnown RBP20.5■□□□□ 0.87
PTPRU-202ENST00000373779 NOL10Q9BSC4 688 aaKnown RBP20.5■□□□□ 0.87
PTPRU-202ENST00000373779 DYNC1I1O14576 645 aa20.5■□□□□ 0.87
PTPRU-202ENST00000373779 FKBP4Q02790 459 aaKnown RBP eCLIP20.5■□□□□ 0.87
PTPRU-202ENST00000373779 FILIP1LQ4L180 1135 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 CKAP2LQ8IYA6 745 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 KCNH5Q8NCM2 988 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 KDM5AP29375 1690 aaKnown RBP20.49■□□□□ 0.87
PTPRU-202ENST00000373779 UBE2Q2Q8WVN8 375 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 DDX19AQ9NUU7 478 aaKnown RBP20.49■□□□□ 0.87
PTPRU-202ENST00000373779 ACEP12821 1306 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 LARP1Q6PKG0 1096 aaKnown RBP20.49■□□□□ 0.87
PTPRU-202ENST00000373779 USP26Q9BXU7 913 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 ABCC2Q92887 1545 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 TRIM35Q9UPQ4 493 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 MBD5Q9P267 1494 aa20.49■□□□□ 0.87
PTPRU-202ENST00000373779 DBF4Q9UBU7 674 aaPredicted RBP20.48■□□□□ 0.87
PTPRU-202ENST00000373779 HCLS1P14317 486 aaPredicted RBP20.48■□□□□ 0.87
PTPRU-202ENST00000373779 NCBP3Q53F19 620 aaKnown RBP20.48■□□□□ 0.87
PTPRU-202ENST00000373779 RHPN1Q8TCX5 695 aa20.48■□□□□ 0.87
PTPRU-202ENST00000373779 ABCC1P33527 1531 aa20.48■□□□□ 0.87
PTPRU-202ENST00000373779 RRP12Q5JTH9 1297 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms