RNA–Protein interactions for RNA: ENST00000371820.3

COL5A1-202, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 2

Gene COL5A1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-202ENST00000371820 CC2D1BQ5T0F9 858 aaKnown RBP13.82□□□□□ -0.2
COL5A1-202ENST00000371820 MSL1Q68DK7 614 aa13.82□□□□□ -0.2
COL5A1-202ENST00000371820 FLAD1Q8NFF5 587 aa13.82□□□□□ -0.2
COL5A1-202ENST00000371820 PHKG2P15735 406 aa13.81□□□□□ -0.2
COL5A1-202ENST00000371820 MTHFSP49914 203 aa13.81□□□□□ -0.2
COL5A1-202ENST00000371820 PIGBQ92521 554 aa13.81□□□□□ -0.2
COL5A1-202ENST00000371820 GOLGB1Q14789 3259 aaKnown RBP13.81□□□□□ -0.2
COL5A1-202ENST00000371820 AMIGO3Q86WK7 504 aa13.8□□□□□ -0.2
COL5A1-202ENST00000371820 TMOD3Q9NYL9 352 aa13.8□□□□□ -0.2
COL5A1-202ENST00000371820 KDRP35968 1356 aa13.8□□□□□ -0.2
COL5A1-202ENST00000371820 YBX3P16989 372 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL5A1-202ENST00000371820 IL13P35225 146 aa13.79□□□□□ -0.2
COL5A1-202ENST00000371820 AK7Q96M32 723 aa13.79□□□□□ -0.2
COL5A1-202ENST00000371820 DIAPH1O60610 1272 aaKnown RBP13.78□□□□□ -0.2
COL5A1-202ENST00000371820 C1orf141Q5JVX7 400 aa13.78□□□□□ -0.2
COL5A1-202ENST00000371820 SULT6B1Q6IMI4 303 aa13.78□□□□□ -0.2
COL5A1-202ENST00000371820 ZNF530Q6P9A1 599 aaPredicted RBP13.78□□□□□ -0.2
COL5A1-202ENST00000371820 DCAF5Q96JK2 942 aa13.78□□□□□ -0.2
COL5A1-202ENST00000371820 LOC102724428A0A0B4J2F2 783 aa13.77□□□□□ -0.21
COL5A1-202ENST00000371820 ERVV-2B6SEH9 535 aa13.77□□□□□ -0.21
COL5A1-202ENST00000371820 SIK1P57059 783 aa13.77□□□□□ -0.21
COL5A1-202ENST00000371820 FKBP8Q14318 412 aa13.77□□□□□ -0.21
COL5A1-202ENST00000371820 LINC00116Q8NCU8 138 aa13.77□□□□□ -0.21
COL5A1-202ENST00000371820 CD2APQ9Y5K6 639 aa13.77□□□□□ -0.21
COL5A1-202ENST00000371820 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.76□□□□□ -0.21
COL5A1-202ENST00000371820 GRIN3BO60391 1043 aa13.76□□□□□ -0.21
COL5A1-202ENST00000371820 PHF14O94880 888 aa13.76□□□□□ -0.21
COL5A1-202ENST00000371820 SSFA2P28290 1259 aa13.76□□□□□ -0.21
COL5A1-202ENST00000371820 CFAP53Q96M91 514 aa13.76□□□□□ -0.21
COL5A1-202ENST00000371820 ASAP1Q9ULH1 1129 aa13.76□□□□□ -0.21
COL5A1-202ENST00000371820 ZNF831Q5JPB2 1677 aa13.75□□□□□ -0.21
COL5A1-202ENST00000371820 C1QTNF8P60827 252 aa13.75□□□□□ -0.21
COL5A1-202ENST00000371820 ITPK1Q13572 414 aa13.75□□□□□ -0.21
COL5A1-202ENST00000371820 AEBP1Q8IUX7 1158 aa13.75□□□□□ -0.21
COL5A1-202ENST00000371820 CABP4P57796 275 aa13.74□□□□□ -0.21
COL5A1-202ENST00000371820 SMIM5Q71RC9 77 aa13.74□□□□□ -0.21
COL5A1-202ENST00000371820 ATG3Q9NT62 314 aa13.74□□□□□ -0.21
COL5A1-202ENST00000371820 CNGB1Q14028 1251 aaPredicted RBP13.73□□□□□ -0.21
COL5A1-202ENST00000371820 COL5A3P25940 1745 aaPredicted RBP13.73□□□□□ -0.21
COL5A1-202ENST00000371820 KDM6AO15550 1401 aaPredicted RBP13.73□□□□□ -0.21
COL5A1-202ENST00000371820 GNPATO15228 680 aa13.72□□□□□ -0.21
COL5A1-202ENST00000371820 GIGYF1O75420 1035 aaPredicted RBP13.72□□□□□ -0.21
COL5A1-202ENST00000371820 ATP6V1AP38606 617 aa13.72□□□□□ -0.21
COL5A1-202ENST00000371820 AKAP4Q5JQC9 854 aa13.72□□□□□ -0.21
COL5A1-202ENST00000371820 COL3A1P02461 1466 aaPredicted RBP13.72□□□□□ -0.21
COL5A1-202ENST00000371820 SENP3-EIF4A1A0A087X0R7 540 aa13.71□□□□□ -0.21
COL5A1-202ENST00000371820 HMOX1P09601 288 aa13.71□□□□□ -0.21
COL5A1-202ENST00000371820 NUDCQ9Y266 331 aa13.71□□□□□ -0.21
COL5A1-202ENST00000371820 ADCY9O60503 1353 aa13.71□□□□□ -0.22
COL5A1-202ENST00000371820 U2SURPO15042 1029 aaKnown RBP13.7□□□□□ -0.22
COL5A1-202ENST00000371820 SLC4A9Q96Q91 983 aa13.7□□□□□ -0.22
COL5A1-202ENST00000371820 TSHZ2Q9NRE2 1034 aa13.7□□□□□ -0.22
COL5A1-202ENST00000371820 ATP10DQ9P241 1426 aa13.7□□□□□ -0.22
COL5A1-202ENST00000371820 SCN11AQ9UI33 1791 aa13.7□□□□□ -0.22
COL5A1-202ENST00000371820 KIF13BQ9NQT8 1826 aa13.69□□□□□ -0.22
COL5A1-202ENST00000371820 CICQ96RK0 1608 aaPredicted RBP13.69□□□□□ -0.22
COL5A1-202ENST00000371820 KIAA1551Q9HCM1 1747 aa13.69□□□□□ -0.22
COL5A1-202ENST00000371820 HNRNPUQ00839 825 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL5A1-202ENST00000371820 PRKRIP1Q9H875 184 aaPredicted RBP13.68□□□□□ -0.22
COL5A1-202ENST00000371820 PXDNLA1KZ92 1463 aa13.67□□□□□ -0.22
COL5A1-202ENST00000371820 C4AP0C0L4 1744 aa13.67□□□□□ -0.22
COL5A1-202ENST00000371820 CNTNAP4Q9C0A0 1308 aa13.67□□□□□ -0.22
COL5A1-202ENST00000371820 MMP10P09238 476 aa13.67□□□□□ -0.22
COL5A1-202ENST00000371820 PPP2R1AP30153 589 aa13.67□□□□□ -0.22
COL5A1-202ENST00000371820 GAS2L2Q8NHY3 880 aa13.67□□□□□ -0.22
COL5A1-202ENST00000371820 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
COL5A1-202ENST00000371820 RTCBQ9Y3I0 505 aaKnown RBP13.67□□□□□ -0.22
COL5A1-202ENST00000371820 C10orf71Q711Q0 1435 aa13.66□□□□□ -0.22
COL5A1-202ENST00000371820 ADRA2BP18089 450 aa13.66□□□□□ -0.22
COL5A1-202ENST00000371820 RC3H1Q5TC82 1133 aaKnown RBP13.66□□□□□ -0.22
COL5A1-202ENST00000371820 NFATC2IPQ8NCF5 419 aa13.66□□□□□ -0.22
COL5A1-202ENST00000371820 TJP1Q07157 1748 aa13.66□□□□□ -0.22
COL5A1-202ENST00000371820 MRC1P22897 1456 aa13.66□□□□□ -0.22
COL5A1-202ENST00000371820 MYH14Q7Z406 1995 aaKnown RBP13.65□□□□□ -0.22
COL5A1-202ENST00000371820 RNMTO43148 476 aaKnown RBP13.65□□□□□ -0.22
COL5A1-202ENST00000371820 MTHFSDQ2M296 383 aaKnown RBP13.65□□□□□ -0.22
COL5A1-202ENST00000371820 TRAPPC3LQ5T215 181 aa13.65□□□□□ -0.22
COL5A1-202ENST00000371820 SLC52A2Q9HAB3 445 aa13.65□□□□□ -0.22
COL5A1-202ENST00000371820 WWC3Q9ULE0 1092 aa13.65□□□□□ -0.22
COL5A1-202ENST00000371820 ADAMTS7Q9UKP4 1686 aa13.65□□□□□ -0.22
COL5A1-202ENST00000371820 RPS6KA4O75676 772 aa13.64□□□□□ -0.23
COL5A1-202ENST00000371820 NLGN1Q8N2Q7 840 aa13.64□□□□□ -0.23
COL5A1-202ENST00000371820 VIRMAQ69YN4 1812 aaKnown RBP13.64□□□□□ -0.23
COL5A1-202ENST00000371820 ZBED9Q6R2W3 1325 aa13.64□□□□□ -0.23
COL5A1-202ENST00000371820 N4BP2Q86UW6 1770 aaPredicted RBP13.63□□□□□ -0.23
COL5A1-202ENST00000371820 GNAT3A8MTJ3 354 aa13.63□□□□□ -0.23
COL5A1-202ENST00000371820 NEFMP07197 916 aa13.63□□□□□ -0.23
COL5A1-202ENST00000371820 GYS1P13807 737 aa13.63□□□□□ -0.23
COL5A1-202ENST00000371820 ARHGEF1Q92888 912 aaKnown RBP13.63□□□□□ -0.23
COL5A1-202ENST00000371820 PTCD1O75127 700 aaKnown RBP13.62□□□□□ -0.23
COL5A1-202ENST00000371820 U2AF1L5P0DN76 240 aaPredicted RBP13.62□□□□□ -0.23
COL5A1-202ENST00000371820 PRKAR2BP31323 418 aa13.62□□□□□ -0.23
COL5A1-202ENST00000371820 U2AF1Q01081 240 aaKnown RBP eCLIP13.62□□□□□ -0.23
COL5A1-202ENST00000371820 RSPH6AQ9H0K4 717 aa13.62□□□□□ -0.23
COL5A1-202ENST00000371820 GPBP1L1Q9HC44 474 aaPredicted RBP13.62□□□□□ -0.23
COL5A1-202ENST00000371820 PPP4R2Q9NY27 417 aa13.62□□□□□ -0.23
COL5A1-202ENST00000371820 BRCA1P38398 1863 aaKnown RBP13.61□□□□□ -0.23
COL5A1-202ENST00000371820 FCHSD2O94868 740 aa13.61□□□□□ -0.23
COL5A1-202ENST00000371820 RFC4P35249 363 aa13.61□□□□□ -0.23
COL5A1-202ENST00000371820 TGFB2P61812 414 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms