RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 PEG3Q9GZU2 1588 aa23.17■■□□□ 1.3
LMO4-202ENST00000370544 ABCF2Q9UG63 623 aa23.16■■□□□ 1.3
LMO4-202ENST00000370544 DHX8Q14562 1220 aaKnown RBP23.16■■□□□ 1.3
LMO4-202ENST00000370544 PDIA4P13667 645 aaKnown RBP23.16■■□□□ 1.3
LMO4-202ENST00000370544 PRPF40BQ6NWY9 871 aaKnown RBP23.16■■□□□ 1.3
LMO4-202ENST00000370544 ZNHIT6Q9NWK9 470 aaKnown RBP23.16■■□□□ 1.3
LMO4-202ENST00000370544 BOLA2Q9H3K6 86 aa23.16■■□□□ 1.3
LMO4-202ENST00000370544 MCM4P33991 863 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 ZSCAN29Q8IWY8 852 aaPredicted RBP23.15■■□□□ 1.3
LMO4-202ENST00000370544 GRPEL1Q9HAV7 217 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 HYPKQ9NX55 129 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 LRRFIP2Q9Y608 721 aaKnown RBP23.15■■□□□ 1.3
LMO4-202ENST00000370544 PTPRCP08575 1304 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 U3KPZ7 1027 aaPredicted RBP23.15■■□□□ 1.3
LMO4-202ENST00000370544 PATL2C9JE40 543 aaKnown RBP23.15■■□□□ 1.3
LMO4-202ENST00000370544 PPFIBP1Q86W92 1011 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 NUP62CLQ9H1M0 184 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 ZHX3Q9H4I2 956 aa23.15■■□□□ 1.3
LMO4-202ENST00000370544 DBF4Q9UBU7 674 aaPredicted RBP23.15■■□□□ 1.3
LMO4-202ENST00000370544 GPATCH8Q9UKJ3 1502 aaKnown RBP23.14■■□□□ 1.3
LMO4-202ENST00000370544 BRPF3Q9ULD4 1205 aa23.14■■□□□ 1.3
LMO4-202ENST00000370544 SYCP1Q15431 976 aa23.14■■□□□ 1.29
LMO4-202ENST00000370544 DDX11Q96FC9 970 aa23.14■■□□□ 1.29
LMO4-202ENST00000370544 IFIT1P09914 478 aaKnown RBP23.14■■□□□ 1.29
LMO4-202ENST00000370544 ERCC4Q92889 916 aaPredicted RBP23.14■■□□□ 1.29
LMO4-202ENST00000370544 TRIM27P14373 513 aa23.14■■□□□ 1.29
LMO4-202ENST00000370544 VSIG10Q8N0Z9 540 aa23.14■■□□□ 1.29
LMO4-202ENST00000370544 KDM5BQ9UGL1 1544 aa23.13■■□□□ 1.29
LMO4-202ENST00000370544 ANKRD36BQ8N2N9 1353 aa23.12■■□□□ 1.29
LMO4-202ENST00000370544 FLIIQ13045 1269 aa23.12■■□□□ 1.29
LMO4-202ENST00000370544 CAVIN4Q5BKX8 364 aa23.12■■□□□ 1.29
LMO4-202ENST00000370544 CBFA2T2O43439 604 aa23.11■■□□□ 1.29
LMO4-202ENST00000370544 ZPR1O75312 459 aa23.11■■□□□ 1.29
LMO4-202ENST00000370544 CCDC83Q8IWF9 413 aa23.11■■□□□ 1.29
LMO4-202ENST00000370544 IFIT5Q13325 482 aaKnown RBP23.11■■□□□ 1.29
LMO4-202ENST00000370544 CEP57L1Q8IYX8 460 aa23.11■■□□□ 1.29
LMO4-202ENST00000370544 MYO6Q9UM54 1294 aa23.11■■□□□ 1.29
LMO4-202ENST00000370544 HSP90AB3PQ58FF7 597 aa23.11■■□□□ 1.29
LMO4-202ENST00000370544 HMGB2P26583 209 aaKnown RBP23.11■■□□□ 1.29
LMO4-202ENST00000370544 WWC2Q6AWC2 1192 aa23.1■■□□□ 1.29
LMO4-202ENST00000370544 TANGO6Q9C0B7 1094 aa23.1■■□□□ 1.29
LMO4-202ENST00000370544 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.1■■□□□ 1.29
LMO4-202ENST00000370544 UPF3BQ9BZI7 483 aaKnown RBP23.1■■□□□ 1.29
LMO4-202ENST00000370544 CCDC8Q9H0W5 538 aaPredicted RBP23.1■■□□□ 1.29
LMO4-202ENST00000370544 PIBF1Q8WXW3 757 aa23.1■■□□□ 1.29
LMO4-202ENST00000370544 KRT28Q7Z3Y7 464 aa23.1■■□□□ 1.29
LMO4-202ENST00000370544 RAPGEF6Q8TEU7 1601 aa23.09■■□□□ 1.29
LMO4-202ENST00000370544 RDXP35241 583 aaKnown RBP23.09■■□□□ 1.29
LMO4-202ENST00000370544 HMGN5P82970 282 aaKnown RBP23.09■■□□□ 1.29
LMO4-202ENST00000370544 ACEP12821 1306 aa23.09■■□□□ 1.29
LMO4-202ENST00000370544 SKAP1Q86WV1 359 aa23.08■■□□□ 1.29
LMO4-202ENST00000370544 TRMT112Q9UI30 125 aaKnown RBP23.08■■□□□ 1.29
LMO4-202ENST00000370544 MBIPQ9NS73 344 aa23.08■■□□□ 1.29
LMO4-202ENST00000370544 MTERF4Q7Z6M4 381 aaKnown RBP23.07■■□□□ 1.28
LMO4-202ENST00000370544 DEF6Q9H4E7 631 aa23.07■■□□□ 1.28
LMO4-202ENST00000370544 BMP2KQ9NSY1 1161 aaPredicted RBP23.07■■□□□ 1.28
LMO4-202ENST00000370544 CEP131Q9UPN4 1083 aa23.07■■□□□ 1.28
LMO4-202ENST00000370544 MPNDQ8N594 471 aa23.07■■□□□ 1.28
LMO4-202ENST00000370544 A0A087WZG4 1122 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 ADAMTS2O95450 1211 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 SSBP05455 408 aaKnown RBP eCLIP23.06■■□□□ 1.28
LMO4-202ENST00000370544 USP5P45974 858 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 NAPBQ9H115 298 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 ZNF287Q9HBT7 754 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 LUC7LQ9NQ29 371 aaKnown RBP23.06■■□□□ 1.28
LMO4-202ENST00000370544 DCAF8L1A6NGE4 600 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 MAP3K2Q9Y2U5 619 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 FERMT3Q86UX7 667 aa23.06■■□□□ 1.28
LMO4-202ENST00000370544 MINDY4BA8MYZ0 360 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 SLC5A1P13866 664 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 IL16Q14005 1332 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 MAP3K12Q12852 859 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 SH2B1Q9NRF2 756 aaPredicted RBP23.05■■□□□ 1.28
LMO4-202ENST00000370544 TNRQ92752 1358 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 ANKRD18BA2A2Z9 1011 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 FAM83GA6ND36 823 aa23.05■■□□□ 1.28
LMO4-202ENST00000370544 IFNL2Q8IZJ0 200 aa23.04■■□□□ 1.28
LMO4-202ENST00000370544 MAP3K11Q16584 847 aa23.04■■□□□ 1.28
LMO4-202ENST00000370544 UGGT2Q9NYU1 1516 aa23.04■■□□□ 1.28
LMO4-202ENST00000370544 TMOD2Q9NZR1 351 aa23.04■■□□□ 1.28
LMO4-202ENST00000370544 DUOX2Q9NRD8 1548 aa23.04■■□□□ 1.28
LMO4-202ENST00000370544 HMGB1P09429 215 aaKnown RBP23.03■■□□□ 1.28
LMO4-202ENST00000370544 ZNF76P36508 570 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 POLR3DP05423 398 aaPredicted RBP23.03■■□□□ 1.28
LMO4-202ENST00000370544 ANKIB1Q9P2G1 1089 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 MPHOSPH10O00566 681 aaKnown RBP23.03■■□□□ 1.28
LMO4-202ENST00000370544 MAP7D2Q96T17 732 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 PDCL3Q9H2J4 239 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 PIK3R4Q99570 1358 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 SMTNL1A8MU46 457 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 PLEKHH1Q9ULM0 1364 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 PLCH2O75038 1416 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 TXLNBQ8N3L3 684 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 ZBTB3Q9H5J0 574 aa23.03■■□□□ 1.28
LMO4-202ENST00000370544 RALGAPBQ86X10 1494 aa23.02■■□□□ 1.28
LMO4-202ENST00000370544 EXOC5O00471 708 aa23.02■■□□□ 1.28
LMO4-202ENST00000370544 ANKRD24Q8TF21 1146 aa23.02■■□□□ 1.28
LMO4-202ENST00000370544 DZIP1Q86YF9 867 aaKnown RBP23.01■■□□□ 1.27
LMO4-202ENST00000370544 SYCE3A1L190 88 aa23.01■■□□□ 1.27
LMO4-202ENST00000370544 MKNK2Q9HBH9 465 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms