RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 CCDC69A6NI79 296 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 PER1O15534 1290 aaPredicted RBP16.15■□□□□ 0.18
VCP-201ENST00000358901 CKAP2LQ8IYA6 745 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 MPHOSPH8Q99549 860 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 IDH1O75874 414 aaKnown RBP16.15■□□□□ 0.18
VCP-201ENST00000358901 MEIS3Q99687 375 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 CCDC66A2RUB6 948 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 PATL2C9JE40 543 aaKnown RBP16.15■□□□□ 0.18
VCP-201ENST00000358901 LARP1Q6PKG0 1096 aaKnown RBP16.15■□□□□ 0.18
VCP-201ENST00000358901 PRDM11Q9NQV5 511 aa16.15■□□□□ 0.18
VCP-201ENST00000358901 SDSP20132 328 aa16.14■□□□□ 0.17
VCP-201ENST00000358901 MPRIPQ6WCQ1 1025 aa16.14■□□□□ 0.17
VCP-201ENST00000358901 TFIP11Q9UBB9 837 aaKnown RBP16.14■□□□□ 0.17
VCP-201ENST00000358901 CD109Q6YHK3 1445 aa16.14■□□□□ 0.17
VCP-201ENST00000358901 SEC24BO95487 1268 aa16.14■□□□□ 0.17
VCP-201ENST00000358901 EPS15P42566 896 aa16.14■□□□□ 0.17
VCP-201ENST00000358901 DHX29Q7Z478 1369 aaKnown RBP16.14■□□□□ 0.17
VCP-201ENST00000358901 ZNF608Q9ULD9 1512 aaPredicted RBP16.14■□□□□ 0.17
VCP-201ENST00000358901 DHX8Q14562 1220 aaKnown RBP16.14■□□□□ 0.17
VCP-201ENST00000358901 PRAG1Q86YV5 1406 aa16.14■□□□□ 0.17
VCP-201ENST00000358901 UGGT2Q9NYU1 1516 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 PTCD1O75127 700 aaKnown RBP16.13■□□□□ 0.17
VCP-201ENST00000358901 PDCL2Q8N4E4 241 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 ARHGAP45Q92619 1136 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 MAGEC2Q9UBF1 373 aaPredicted RBP16.13■□□□□ 0.17
VCP-201ENST00000358901 CDKL5O76039 1030 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 ERCC4Q92889 916 aaPredicted RBP16.13■□□□□ 0.17
VCP-201ENST00000358901 CCDC43Q96MW1 224 aaKnown RBP16.13■□□□□ 0.17
VCP-201ENST00000358901 SPINK5Q9NQ38 1064 aaPredicted RBP16.13■□□□□ 0.17
VCP-201ENST00000358901 U3KPZ7 1027 aaPredicted RBP16.13■□□□□ 0.17
VCP-201ENST00000358901 GUCY1B3Q02153 619 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 ZSCAN25Q6NSZ9 544 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 FAM135AQ9P2D6 1515 aa16.13■□□□□ 0.17
VCP-201ENST00000358901 PIP4K2AP48426 406 aaPredicted RBP16.12■□□□□ 0.17
VCP-201ENST00000358901 CFAP100Q494V2 611 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 ANKLE2Q86XL3 938 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 PKNOX2Q96KN3 472 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 ECHDC1Q9NTX5 307 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 SLC3A2P08195 630 aaKnown RBP16.12■□□□□ 0.17
VCP-201ENST00000358901 IMMTQ16891 758 aaKnown RBP16.12■□□□□ 0.17
VCP-201ENST00000358901 PPP1R42Q7Z4L9 355 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 KCNH5Q8NCM2 988 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 DACH1Q9UI36 760 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 STX6O43752 255 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 TDO2P48775 406 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 MYD88Q99836 296 aa16.12■□□□□ 0.17
VCP-201ENST00000358901 DBF4Q9UBU7 674 aaPredicted RBP16.12■□□□□ 0.17
VCP-201ENST00000358901 TMX3Q96JJ7 454 aa16.11■□□□□ 0.17
VCP-201ENST00000358901 GNL3LQ9NVN8 582 aaKnown RBP16.11■□□□□ 0.17
VCP-201ENST00000358901 CTDP1Q9Y5B0 961 aaPredicted RBP16.11■□□□□ 0.17
VCP-201ENST00000358901 CBFA2T2O43439 604 aa16.11■□□□□ 0.17
VCP-201ENST00000358901 ZNHIT6Q9NWK9 470 aaKnown RBP16.11■□□□□ 0.17
VCP-201ENST00000358901 ASXL1Q8IXJ9 1541 aa16.11■□□□□ 0.17
VCP-201ENST00000358901 PI4KAP2A4QPH2 592 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 PI4KAP1Q8N8J0 262 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 C8orf58Q8NAV2 365 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 CDK5RAP3Q96JB5 506 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 UBAC1Q9BSL1 405 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 ANXA1P04083 346 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 SFPQP23246 707 aaKnown RBP eCLIP16.1■□□□□ 0.17
VCP-201ENST00000358901 CARD14Q9BXL6 1004 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 ANKRD36BQ8N2N9 1353 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 IKQ13123 557 aaPredicted RBP16.1■□□□□ 0.17
VCP-201ENST00000358901 SKIDA1Q1XH10 827 aa16.1■□□□□ 0.17
VCP-201ENST00000358901 NOM1Q5C9Z4 860 aaKnown RBP16.1■□□□□ 0.17
VCP-201ENST00000358901 C16orf71Q8IYS4 520 aaPredicted RBP16.1■□□□□ 0.17
VCP-201ENST00000358901 CDR1P51861 262 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 PTPN14Q15678 1187 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 HSP90AB2PQ58FF8 381 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 AXDND1Q5T1B0 1012 aaPredicted RBP16.09■□□□□ 0.17
VCP-201ENST00000358901 CWC15Q9P013 229 aaKnown RBP16.09■□□□□ 0.17
VCP-201ENST00000358901 SMTNL1A8MU46 457 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 IFIT1P09914 478 aaKnown RBP16.09■□□□□ 0.17
VCP-201ENST00000358901 ZSCAN23Q3MJ62 389 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 CT47A1Q5JQC4 288 aaPredicted RBP16.09■□□□□ 0.17
VCP-201ENST00000358901 UBXN4Q92575 508 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 AMOTL2Q9Y2J4 779 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 HCLS1P14317 486 aaPredicted RBP16.09■□□□□ 0.17
VCP-201ENST00000358901 GJB2P29033 226 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 ANKRD44Q8N8A2 993 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 ANO10Q9NW15 660 aa16.09■□□□□ 0.17
VCP-201ENST00000358901 FOXO3O43524 673 aa16.08■□□□□ 0.17
VCP-201ENST00000358901 ADCY5O95622 1261 aa16.08■□□□□ 0.16
VCP-201ENST00000358901 PDE1AP54750 535 aa16.08■□□□□ 0.16
VCP-201ENST00000358901 POLR3AO14802 1390 aaPredicted RBP16.08■□□□□ 0.16
VCP-201ENST00000358901 METTL24Q5JXM2 366 aa16.08■□□□□ 0.16
VCP-201ENST00000358901 AIDAQ96BJ3 306 aa16.08■□□□□ 0.16
VCP-201ENST00000358901 C8orf76Q96K31 380 aa16.08■□□□□ 0.16
VCP-201ENST00000358901 LRP2BPQ9P2M1 347 aa16.08■□□□□ 0.16
VCP-201ENST00000358901 NOL7Q9UMY1 257 aaKnown RBP16.07■□□□□ 0.16
VCP-201ENST00000358901 CCT2P78371 535 aaKnown RBP16.07■□□□□ 0.16
VCP-201ENST00000358901 AMOTQ4VCS5 1084 aa16.07■□□□□ 0.16
VCP-201ENST00000358901 CCAR1Q8IX12 1150 aaKnown RBP16.07■□□□□ 0.16
VCP-201ENST00000358901 STIM1Q13586 685 aa16.07■□□□□ 0.16
VCP-201ENST00000358901 PIBF1Q8WXW3 757 aa16.07■□□□□ 0.16
VCP-201ENST00000358901 EVI5LQ96CN4 794 aa16.07■□□□□ 0.16
VCP-201ENST00000358901 C16orf45Q96MC5 204 aaPredicted RBP16.07■□□□□ 0.16
VCP-201ENST00000358901 CLIP2Q9UDT6 1046 aa16.07■□□□□ 0.16
VCP-201ENST00000358901 ABCF2Q9UG63 623 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 174.8 ms