RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 FANCIQ9NVI1 1328 aa24.77■■□□□ 1.56
CHMP4A-201ENST00000347519 CHL1O00533 1208 aa24.77■■□□□ 1.56
CHMP4A-201ENST00000347519 TEFQ10587 303 aa24.77■■□□□ 1.56
CHMP4A-201ENST00000347519 TAF7Q15545 349 aaPredicted RBP24.77■■□□□ 1.56
CHMP4A-201ENST00000347519 MBIPQ9NS73 344 aa24.77■■□□□ 1.56
CHMP4A-201ENST00000347519 KDM3BQ7LBC6 1761 aa24.76■■□□□ 1.55
CHMP4A-201ENST00000347519 GNAI1P63096 354 aa24.76■■□□□ 1.55
CHMP4A-201ENST00000347519 FAM182BQ5T319 152 aa24.76■■□□□ 1.55
CHMP4A-201ENST00000347519 SLC52A2Q9HAB3 445 aa24.76■■□□□ 1.55
CHMP4A-201ENST00000347519 RGS12O14924 1447 aa24.75■■□□□ 1.55
CHMP4A-201ENST00000347519 NFATC2IPQ8NCF5 419 aa24.75■■□□□ 1.55
CHMP4A-201ENST00000347519 KAT6BQ8WYB5 2073 aa24.74■■□□□ 1.55
CHMP4A-201ENST00000347519 ERVV-2B6SEH9 535 aa24.73■■□□□ 1.55
CHMP4A-201ENST00000347519 KCNQ3O43525 872 aa24.73■■□□□ 1.55
CHMP4A-201ENST00000347519 CABP4P57796 275 aa24.73■■□□□ 1.55
CHMP4A-201ENST00000347519 MYH16Q9H6N6 1097 aa24.73■■□□□ 1.55
CHMP4A-201ENST00000347519 TSPYL4Q9UJ04 414 aa24.72■■□□□ 1.55
CHMP4A-201ENST00000347519 ACSBG1Q96GR2 724 aa24.71■■□□□ 1.55
CHMP4A-201ENST00000347519 BTBD11A6QL63 1104 aa24.7■■□□□ 1.55
CHMP4A-201ENST00000347519 SBF2Q86WG5 1849 aa24.7■■□□□ 1.54
CHMP4A-201ENST00000347519 PRIM1P49642 420 aaKnown RBP24.69■■□□□ 1.54
CHMP4A-201ENST00000347519 EXOSC9Q06265 439 aaKnown RBP24.69■■□□□ 1.54
CHMP4A-201ENST00000347519 KRT24Q2M2I5 525 aa24.69■■□□□ 1.54
CHMP4A-201ENST00000347519 PAPPAQ13219 1627 aa24.69■■□□□ 1.54
CHMP4A-201ENST00000347519 SLC39A6Q13433 755 aa24.68■■□□□ 1.54
CHMP4A-201ENST00000347519 KRT27Q7Z3Y8 459 aa24.68■■□□□ 1.54
CHMP4A-201ENST00000347519 PIGBQ92521 554 aa24.68■■□□□ 1.54
CHMP4A-201ENST00000347519 UPF1Q92900 1129 aaKnown RBP eCLIP24.68■■□□□ 1.54
CHMP4A-201ENST00000347519 BABAM1Q9NWV8 329 aa24.68■■□□□ 1.54
CHMP4A-201ENST00000347519 BCL9O00512 1426 aa24.67■■□□□ 1.54
CHMP4A-201ENST00000347519 KCNQ2O43526 872 aa24.67■■□□□ 1.54
CHMP4A-201ENST00000347519 CENPBP07199 599 aaPredicted RBP24.67■■□□□ 1.54
CHMP4A-201ENST00000347519 TMOD3Q9NYL9 352 aa24.67■■□□□ 1.54
CHMP4A-201ENST00000347519 PTF1AQ7RTS3 328 aa24.66■■□□□ 1.54
CHMP4A-201ENST00000347519 C8orf58Q8NAV2 365 aa24.66■■□□□ 1.54
CHMP4A-201ENST00000347519 NHSQ6T4R5 1651 aa24.65■■□□□ 1.54
CHMP4A-201ENST00000347519 TSPYL6Q8N831 410 aa24.65■■□□□ 1.54
CHMP4A-201ENST00000347519 SYTL4Q96C24 671 aaPredicted RBP24.65■■□□□ 1.54
CHMP4A-201ENST00000347519 UBR2Q8IWV8 1755 aa24.64■■□□□ 1.54
CHMP4A-201ENST00000347519 EIF4A1P60842 406 aaKnown RBP24.63■■□□□ 1.53
CHMP4A-201ENST00000347519 ZNF790Q6PG37 636 aa24.63■■□□□ 1.53
CHMP4A-201ENST00000347519 ELL2O00472 640 aaPredicted RBP24.62■■□□□ 1.53
CHMP4A-201ENST00000347519 ASAP1Q9ULH1 1129 aa24.62■■□□□ 1.53
CHMP4A-201ENST00000347519 KCPQ6ZWJ8 1503 aa24.61■■□□□ 1.53
CHMP4A-201ENST00000347519 ATG3Q9NT62 314 aa24.61■■□□□ 1.53
CHMP4A-201ENST00000347519 BTAF1O14981 1849 aa24.6■■□□□ 1.53
CHMP4A-201ENST00000347519 C5P01031 1676 aa24.6■■□□□ 1.53
CHMP4A-201ENST00000347519 HEG1Q9ULI3 1381 aa24.58■■□□□ 1.53
CHMP4A-201ENST00000347519 VAMP4O75379 141 aa24.58■■□□□ 1.53
CHMP4A-201ENST00000347519 ZNF496Q96IT1 587 aaPredicted RBP24.58■■□□□ 1.53
CHMP4A-201ENST00000347519 TWISTNBQ3B726 338 aaPredicted RBP24.57■■□□□ 1.52
CHMP4A-201ENST00000347519 FAM196AQ6ZSG2 479 aa24.57■■□□□ 1.52
CHMP4A-201ENST00000347519 PRAMEF22A3QJZ6 481 aa24.56■■□□□ 1.52
CHMP4A-201ENST00000347519 TTC5Q8N0Z6 440 aa24.55■■□□□ 1.52
CHMP4A-201ENST00000347519 RCAN3Q9UKA8 241 aa24.54■■□□□ 1.52
CHMP4A-201ENST00000347519 PTCD1O75127 700 aaKnown RBP24.54■■□□□ 1.52
CHMP4A-201ENST00000347519 GIGYF1O75420 1035 aaPredicted RBP24.53■■□□□ 1.52
CHMP4A-201ENST00000347519 FMNL2Q96PY5 1086 aa24.53■■□□□ 1.52
CHMP4A-201ENST00000347519 TCERG1O14776 1098 aaKnown RBP24.52■■□□□ 1.52
CHMP4A-201ENST00000347519 SLC4A9Q96Q91 983 aa24.52■■□□□ 1.52
CHMP4A-201ENST00000347519 TRIM37O94972 964 aa24.51■■□□□ 1.51
CHMP4A-201ENST00000347519 CT47B1P0C2W7 299 aaPredicted RBP24.51■■□□□ 1.51
CHMP4A-201ENST00000347519 RARSP54136 660 aaKnown RBP24.51■■□□□ 1.51
CHMP4A-201ENST00000347519 BCL11BQ9C0K0 894 aaPredicted RBP24.51■■□□□ 1.51
CHMP4A-201ENST00000347519 LAMB4A4D0S4 1761 aa24.5■■□□□ 1.51
CHMP4A-201ENST00000347519 TJP1Q07157 1748 aa24.5■■□□□ 1.51
CHMP4A-201ENST00000347519 BCAR3O75815 825 aa24.49■■□□□ 1.51
CHMP4A-201ENST00000347519 SSH1Q8WYL5 1049 aa24.49■■□□□ 1.51
CHMP4A-201ENST00000347519 NECTIN2Q92692 538 aa24.49■■□□□ 1.51
CHMP4A-201ENST00000347519 RBM42Q9BTD8 480 aaKnown RBP24.49■■□□□ 1.51
CHMP4A-201ENST00000347519 BCL2L13Q9BXK5 485 aa24.49■■□□□ 1.51
CHMP4A-201ENST00000347519 PALLDQ8WX93 1383 aa24.49■■□□□ 1.51
CHMP4A-201ENST00000347519 EP400Q96L91 3159 aa24.48■■□□□ 1.51
CHMP4A-201ENST00000347519 SNRPA1P09661 255 aaKnown RBP24.47■■□□□ 1.51
CHMP4A-201ENST00000347519 USP16Q9Y5T5 823 aa24.47■■□□□ 1.51
CHMP4A-201ENST00000347519 LY75O60449 1722 aa24.47■■□□□ 1.51
CHMP4A-201ENST00000347519 TNS1Q9HBL0 1735 aaKnown RBP24.47■■□□□ 1.51
CHMP4A-201ENST00000347519 HOXB7P09629 217 aa24.46■■□□□ 1.51
CHMP4A-201ENST00000347519 EIF2S2P20042 333 aaKnown RBP24.46■■□□□ 1.51
CHMP4A-201ENST00000347519 SUPT16HQ9Y5B9 1047 aaKnown RBP24.46■■□□□ 1.51
CHMP4A-201ENST00000347519 SOS1Q07889 1333 aaPredicted RBP24.46■■□□□ 1.51
CHMP4A-201ENST00000347519 SMARCC1Q92922 1105 aaPredicted RBP24.45■■□□□ 1.5
CHMP4A-201ENST00000347519 HDGFL1Q5TGJ6 251 aa24.44■■□□□ 1.5
CHMP4A-201ENST00000347519 DNAJC10Q8IXB1 793 aa24.44■■□□□ 1.5
CHMP4A-201ENST00000347519 MRPL50Q8N5N7 158 aaKnown RBP24.44■■□□□ 1.5
CHMP4A-201ENST00000347519 LOC102724428A0A0B4J2F2 783 aa24.43■■□□□ 1.5
CHMP4A-201ENST00000347519 SIK1P57059 783 aa24.43■■□□□ 1.5
CHMP4A-201ENST00000347519 ALDH1L2Q3SY69 923 aa24.43■■□□□ 1.5
CHMP4A-201ENST00000347519 VSIG10Q8N0Z9 540 aa24.43■■□□□ 1.5
CHMP4A-201ENST00000347519 ZNF428Q96B54 188 aa24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 SMC4Q9NTJ3 1288 aa24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 CICQ96RK0 1608 aaPredicted RBP24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 ZNF831Q5JPB2 1677 aa24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 KCNQ4P56696 695 aa24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 ITPK1Q13572 414 aa24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 CCDC125Q86Z20 511 aa24.42■■□□□ 1.5
CHMP4A-201ENST00000347519 ANXA1P04083 346 aa24.41■■□□□ 1.5
CHMP4A-201ENST00000347519 CCDC30Q5VVM6 783 aa24.41■■□□□ 1.5
CHMP4A-201ENST00000347519 COL5A3P25940 1745 aaPredicted RBP24.4■■□□□ 1.5
CHMP4A-201ENST00000347519 PROSER3Q2NL68 480 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms