RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 MAP3K2Q9Y2U5 619 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 ATP8B2P98198 1209 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 G2E3Q7L622 706 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 NPHP3Q7Z494 1330 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 PIK3R4Q99570 1358 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 PDE1AP54750 535 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 TTC22Q5TAA0 569 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 RALYLQ86SE5 291 aaKnown RBP7.56□□□□□ -1.2
PRKDC-202ENST00000338368 CABLES1Q8TDN4 633 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 ISY1Q9ULR0 285 aaKnown RBP7.56□□□□□ -1.2
PRKDC-202ENST00000338368 ARAP3Q8WWN8 1544 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 PREX2Q70Z35 1606 aa7.56□□□□□ -1.2
PRKDC-202ENST00000338368 ZFYVE16Q7Z3T8 1539 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 SBNO1A3KN83 1393 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 BICD2Q8TD16 824 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 A0A087WZG4 1122 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 SEC24BO95487 1268 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 SLC39A6Q13433 755 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 PHAXQ9H814 394 aaKnown RBP7.55□□□□□ -1.2
PRKDC-202ENST00000338368 TMOD3Q9NYL9 352 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 VPS37DQ86XT2 251 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 ARHGAP31Q2M1Z3 1444 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 STARD3NLO95772 234 aa7.55□□□□□ -1.2
PRKDC-202ENST00000338368 G3V3G9 751 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 SNRPA1P09661 255 aaKnown RBP7.54□□□□□ -1.2
PRKDC-202ENST00000338368 DCAF8Q5TAQ9 597 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 CAVIN1Q6NZI2 390 aaKnown RBP7.54□□□□□ -1.2
PRKDC-202ENST00000338368 CEP85Q6P2H3 762 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 BLOC1S2Q6QNY1 142 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 ANKRD13DQ6ZTN6 518 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 ZBTB3Q9H5J0 574 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 TRIM29Q14134 588 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 TTC39AQ5SRH9 613 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 TBC1D2BQ9UPU7 963 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 ECHDC1Q9NTX5 307 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 SDSP20132 328 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 ZCRB1Q8TBF4 217 aaKnown RBP7.54□□□□□ -1.2
PRKDC-202ENST00000338368 CCDC34Q96HJ3 373 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 BOLA2Q9H3K6 86 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 PDCP20941 246 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 HSPA2P54652 639 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 MBD3O95983 291 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 TSHZ3Q63HK5 1081 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 KSR2Q6VAB6 950 aa7.54□□□□□ -1.2
PRKDC-202ENST00000338368 CHAF1AQ13111 956 aaPredicted RBP7.54□□□□□ -1.2
PRKDC-202ENST00000338368 JAKMIP1Q96N16 626 aaKnown RBP7.54□□□□□ -1.2
PRKDC-202ENST00000338368 FKBP4Q02790 459 aaKnown RBP eCLIP7.53□□□□□ -1.2
PRKDC-202ENST00000338368 TPM4P67936 248 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 PDRG1Q9NUG6 133 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 MAP3K5Q99683 1374 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 ANKRD1Q15327 319 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 AATKQ6ZMQ8 1374 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 ROBO2Q9HCK4 1378 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 WDR33Q9C0J8 1336 aaKnown RBP7.53□□□□□ -1.2
PRKDC-202ENST00000338368 ATP5J2-PTCD1G3V325 749 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 COPS6Q7L5N1 327 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 CCDC85AQ96PX6 553 aaPredicted RBP7.53□□□□□ -1.2
PRKDC-202ENST00000338368 RNMTO43148 476 aaKnown RBP7.53□□□□□ -1.2
PRKDC-202ENST00000338368 BABAM1Q9NWV8 329 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 MSH6P52701 1360 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 PRR36Q9H6K5 1346 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 ERICH2A1L162 156 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 BECN2A8MW95 431 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 LINS1Q8NG48 757 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 IFIT1P09914 478 aaKnown RBP7.53□□□□□ -1.2
PRKDC-202ENST00000338368 NFATC2IPQ8NCF5 419 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 LGR6Q9HBX8 967 aa7.53□□□□□ -1.2
PRKDC-202ENST00000338368 SOS1Q07889 1333 aaPredicted RBP7.53□□□□□ -1.2
PRKDC-202ENST00000338368 AKAP17AQ02040 695 aaKnown RBP7.52□□□□□ -1.2
PRKDC-202ENST00000338368 PRPF40BQ6NWY9 871 aaKnown RBP7.52□□□□□ -1.2
PRKDC-202ENST00000338368 PLEKHM2Q8IWE5 1019 aa7.52□□□□□ -1.2
PRKDC-202ENST00000338368 ZCCHC11Q5TAX3 1644 aaKnown RBP7.52□□□□□ -1.2
PRKDC-202ENST00000338368 EXOC5O00471 708 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 UBE3BQ7Z3V4 1068 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 STK3Q13188 491 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 GOLGA6L19H0YKK7 550 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 RNF214Q8ND24 703 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 ZSCAN31Q96LW9 406 aaPredicted RBP7.52□□□□□ -1.21
PRKDC-202ENST00000338368 ALDH1L1O75891 902 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 JARID2Q92833 1246 aaPredicted RBP7.52□□□□□ -1.21
PRKDC-202ENST00000338368 ADCY10Q96PN6 1610 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 NFXL1Q6ZNB6 911 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 LARP1BQ659C4 914 aaKnown RBP7.52□□□□□ -1.21
PRKDC-202ENST00000338368 XAGE3Q8WTP9 111 aa7.52□□□□□ -1.21
PRKDC-202ENST00000338368 PLXNC1O60486 1568 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 PIP4K2AP48426 406 aaPredicted RBP7.51□□□□□ -1.21
PRKDC-202ENST00000338368 KRT32Q14532 448 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 ABCC3O15438 1527 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 FOSBP53539 338 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 CWF19L2Q2TBE0 894 aaKnown RBP7.51□□□□□ -1.21
PRKDC-202ENST00000338368 GRM8O00222 908 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 NBPF6Q5VWK0 638 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 SASS6Q6UVJ0 657 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 NBPF4Q96M43 638 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 EVI5LQ96CN4 794 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 PLEKHG1Q9ULL1 1385 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 AMOTL1Q8IY63 956 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 FIBPO43427 364 aa7.51□□□□□ -1.21
PRKDC-202ENST00000338368 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.51□□□□□ -1.217e-7■■■□□ 19.1
PRKDC-202ENST00000338368 AKAP2Q9Y2D5 859 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms