RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 SLFN5Q08AF3 891 aa12.44□□□□□ -0.42
RFX3-201ENST00000302303 RTF1Q92541 710 aaKnown RBP12.44□□□□□ -0.42
RFX3-201ENST00000302303 MIS18AQ9NYP9 233 aa12.44□□□□□ -0.42
RFX3-201ENST00000302303 IL16Q14005 1332 aa12.44□□□□□ -0.42
RFX3-201ENST00000302303 KCNQ3O43525 872 aa12.43□□□□□ -0.42
RFX3-201ENST00000302303 TAF7Q15545 349 aaPredicted RBP12.43□□□□□ -0.42
RFX3-201ENST00000302303 PIGBQ92521 554 aa12.43□□□□□ -0.42
RFX3-201ENST00000302303 GOLGA2Q08379 1002 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 ACSBG1Q96GR2 724 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 CFAP44Q96MT7 982 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 ITGB4P16144 1822 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 DOT1LQ8TEK3 1739 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 SBF2Q86WG5 1849 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 DUSP27Q5VZP5 1158 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 IFT57Q9NWB7 429 aa12.42□□□□□ -0.42
RFX3-201ENST00000302303 CABP4P57796 275 aa12.41□□□□□ -0.42
RFX3-201ENST00000302303 SLC39A6Q13433 755 aa12.41□□□□□ -0.42
RFX3-201ENST00000302303 FAM196AQ6ZSG2 479 aa12.41□□□□□ -0.42
RFX3-201ENST00000302303 MBIPQ9NS73 344 aa12.41□□□□□ -0.42
RFX3-201ENST00000302303 TEFQ10587 303 aa12.4□□□□□ -0.42
RFX3-201ENST00000302303 TSR2Q969E8 191 aaKnown RBP12.4□□□□□ -0.42
RFX3-201ENST00000302303 ATG3Q9NT62 314 aa12.4□□□□□ -0.42
RFX3-201ENST00000302303 BABAM1Q9NWV8 329 aa12.4□□□□□ -0.42
RFX3-201ENST00000302303 ASAP1Q9ULH1 1129 aa12.4□□□□□ -0.42
RFX3-201ENST00000302303 HEG1Q9ULI3 1381 aa12.4□□□□□ -0.42
RFX3-201ENST00000302303 PAPPAQ13219 1627 aa12.39□□□□□ -0.43
RFX3-201ENST00000302303 NHSQ6T4R5 1651 aa12.39□□□□□ -0.43
RFX3-201ENST00000302303 GNAI1P63096 354 aa12.39□□□□□ -0.43
RFX3-201ENST00000302303 KRT24Q2M2I5 525 aa12.39□□□□□ -0.43
RFX3-201ENST00000302303 FANCIQ9NVI1 1328 aa12.39□□□□□ -0.43
RFX3-201ENST00000302303 KDM3BQ7LBC6 1761 aa12.39□□□□□ -0.43
RFX3-201ENST00000302303 BTBD11A6QL63 1104 aa12.38□□□□□ -0.43
RFX3-201ENST00000302303 E9PSI1 815 aa12.38□□□□□ -0.43
RFX3-201ENST00000302303 CALD1Q05682 793 aaKnown RBP12.38□□□□□ -0.43
RFX3-201ENST00000302303 ZNF790Q6PG37 636 aa12.38□□□□□ -0.43
RFX3-201ENST00000302303 SLC4A9Q96Q91 983 aa12.38□□□□□ -0.43
RFX3-201ENST00000302303 TMOD3Q9NYL9 352 aa12.38□□□□□ -0.43
RFX3-201ENST00000302303 EIF4A1P60842 406 aaKnown RBP12.37□□□□□ -0.43
RFX3-201ENST00000302303 TSPYL6Q8N831 410 aa12.37□□□□□ -0.43
RFX3-201ENST00000302303 C8orf58Q8NAV2 365 aa12.37□□□□□ -0.43
RFX3-201ENST00000302303 BCL11BQ9C0K0 894 aaPredicted RBP12.37□□□□□ -0.43
RFX3-201ENST00000302303 LAS1LQ9Y4W2 734 aaKnown RBP12.37□□□□□ -0.43
RFX3-201ENST00000302303 KCPQ6ZWJ8 1503 aa12.37□□□□□ -0.43
RFX3-201ENST00000302303 TRIM37O94972 964 aa12.37□□□□□ -0.43
RFX3-201ENST00000302303 ILDR2Q71H61 639 aa12.37□□□□□ -0.43
RFX3-201ENST00000302303 SYTL4Q96C24 671 aaPredicted RBP12.37□□□□□ -0.43
RFX3-201ENST00000302303 ZNF496Q96IT1 587 aaPredicted RBP12.37□□□□□ -0.43
RFX3-201ENST00000302303 TSPYL4Q9UJ04 414 aa12.37□□□□□ -0.43
RFX3-201ENST00000302303 UBR2Q8IWV8 1755 aa12.35□□□□□ -0.43
RFX3-201ENST00000302303 PRAMEF22A3QJZ6 481 aa12.35□□□□□ -0.43
RFX3-201ENST00000302303 EXOSC9Q06265 439 aaKnown RBP12.35□□□□□ -0.43
RFX3-201ENST00000302303 BTAF1O14981 1849 aa12.35□□□□□ -0.43
RFX3-201ENST00000302303 PROM2Q8N271 834 aa12.34□□□□□ -0.43
RFX3-201ENST00000302303 MYH16Q9H6N6 1097 aa12.34□□□□□ -0.43
RFX3-201ENST00000302303 VAMP4O75379 141 aa12.33□□□□□ -0.44
RFX3-201ENST00000302303 GIGYF1O75420 1035 aaPredicted RBP12.33□□□□□ -0.44
RFX3-201ENST00000302303 KAT6BQ8WYB5 2073 aa12.32□□□□□ -0.44
RFX3-201ENST00000302303 PTCD1O75127 700 aaKnown RBP12.32□□□□□ -0.44
RFX3-201ENST00000302303 TNS1Q9HBL0 1735 aaKnown RBP12.32□□□□□ -0.44
RFX3-201ENST00000302303 PALLDQ8WX93 1383 aa12.32□□□□□ -0.44
RFX3-201ENST00000302303 ELL2O00472 640 aaPredicted RBP12.32□□□□□ -0.44
RFX3-201ENST00000302303 ITPK1Q13572 414 aa12.32□□□□□ -0.44
RFX3-201ENST00000302303 USP16Q9Y5T5 823 aa12.32□□□□□ -0.44
RFX3-201ENST00000302303 LOC102724428A0A0B4J2F2 783 aa12.31□□□□□ -0.44
RFX3-201ENST00000302303 PLSCR1O15162 318 aa12.31□□□□□ -0.44
RFX3-201ENST00000302303 KCNQ4P56696 695 aa12.31□□□□□ -0.44
RFX3-201ENST00000302303 SIK1P57059 783 aa12.31□□□□□ -0.44
RFX3-201ENST00000302303 FMNL2Q96PY5 1086 aa12.31□□□□□ -0.44
RFX3-201ENST00000302303 LRRC4BQ9NT99 713 aa12.31□□□□□ -0.44
RFX3-201ENST00000302303 LY75O60449 1722 aa12.3□□□□□ -0.44
RFX3-201ENST00000302303 TWISTNBQ3B726 338 aaPredicted RBP12.3□□□□□ -0.44
RFX3-201ENST00000302303 VSIG10Q8N0Z9 540 aa12.3□□□□□ -0.44
RFX3-201ENST00000302303 SMARCC1Q92922 1105 aaPredicted RBP12.3□□□□□ -0.44
RFX3-201ENST00000302303 C5P01031 1676 aa12.3□□□□□ -0.44
RFX3-201ENST00000302303 CICQ96RK0 1608 aaPredicted RBP12.29□□□□□ -0.44
RFX3-201ENST00000302303 TJP1Q07157 1748 aa12.29□□□□□ -0.44
RFX3-201ENST00000302303 APBA3O96018 575 aa12.29□□□□□ -0.44
RFX3-201ENST00000302303 SNRPA1P09661 255 aaKnown RBP12.29□□□□□ -0.44
RFX3-201ENST00000302303 DNAJC10Q8IXB1 793 aa12.29□□□□□ -0.44
RFX3-201ENST00000302303 TTC5Q8N0Z6 440 aa12.29□□□□□ -0.44
RFX3-201ENST00000302303 RBM42Q9BTD8 480 aaKnown RBP12.29□□□□□ -0.44
RFX3-201ENST00000302303 ZNF831Q5JPB2 1677 aa12.29□□□□□ -0.44
RFX3-201ENST00000302303 PDIA6Q15084 440 aa12.28□□□□□ -0.44
RFX3-201ENST00000302303 LRP10Q7Z4F1 713 aa12.28□□□□□ -0.44
RFX3-201ENST00000302303 CAMKK2Q96RR4 588 aa12.28□□□□□ -0.44
RFX3-201ENST00000302303 HOXB7P09629 217 aa12.27□□□□□ -0.44
RFX3-201ENST00000302303 CYP19A1P11511 503 aaPredicted RBP12.27□□□□□ -0.44
RFX3-201ENST00000302303 UPF1Q92900 1129 aaKnown RBP eCLIP12.27□□□□□ -0.44
RFX3-201ENST00000302303 SOS1Q07889 1333 aaPredicted RBP12.27□□□□□ -0.45
RFX3-201ENST00000302303 NBPF26B4DH59 902 aa12.27□□□□□ -0.45
RFX3-201ENST00000302303 ATP6V1AP38606 617 aa12.27□□□□□ -0.45
RFX3-201ENST00000302303 RARSP54136 660 aaKnown RBP12.27□□□□□ -0.45
RFX3-201ENST00000302303 TXNRD1Q16881 649 aa12.27□□□□□ -0.45
RFX3-201ENST00000302303 NBPF14Q5TI25 921 aa12.27□□□□□ -0.45
RFX3-201ENST00000302303 NBPF10Q6P3W6 841 aaKnown RBP12.27□□□□□ -0.45
RFX3-201ENST00000302303 NBPF15Q8N660 670 aa12.27□□□□□ -0.45
RFX3-201ENST00000302303 LINC00116Q8NCU8 138 aa12.27□□□□□ -0.45
RFX3-201ENST00000302303 TCERG1O14776 1098 aaKnown RBP12.26□□□□□ -0.45
RFX3-201ENST00000302303 A1BGP04217 495 aa12.26□□□□□ -0.45
RFX3-201ENST00000302303 CT47B1P0C2W7 299 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms