RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 MAATS1Q7Z4T9 603 aa17.27■□□□□ 0.35
SCN3B-201ENST00000299333 SCAND2PQ9GZW5 306 aaPredicted RBP17.27■□□□□ 0.35
SCN3B-201ENST00000299333 SEPT6Q14141 434 aa17.26■□□□□ 0.35
SCN3B-201ENST00000299333 KRT32Q14532 448 aa17.26■□□□□ 0.35
SCN3B-201ENST00000299333 GIGYF2Q6Y7W6 1299 aaKnown RBP17.26■□□□□ 0.35
SCN3B-201ENST00000299333 SPECC1LQ69YQ0 1117 aa17.26■□□□□ 0.35
SCN3B-201ENST00000299333 CACNA2D4Q7Z3S7 1137 aa17.26■□□□□ 0.35
SCN3B-201ENST00000299333 FKBP4Q02790 459 aaKnown RBP eCLIP17.25■□□□□ 0.35
SCN3B-201ENST00000299333 FKBP15Q5T1M5 1219 aa17.25■□□□□ 0.35
SCN3B-201ENST00000299333 PNISRQ8TF01 805 aaKnown RBP17.25■□□□□ 0.35
SCN3B-201ENST00000299333 SUDS3Q9H7L9 328 aaPredicted RBP17.25■□□□□ 0.35
SCN3B-201ENST00000299333 GDPD2Q9HCC8 539 aa17.25■□□□□ 0.35
SCN3B-201ENST00000299333 RBM27Q9P2N5 1060 aaKnown RBP17.25■□□□□ 0.35
SCN3B-201ENST00000299333 PAXBP1Q9Y5B6 917 aa17.25■□□□□ 0.35
SCN3B-201ENST00000299333 GSDMDP57764 484 aa17.25■□□□□ 0.35
SCN3B-201ENST00000299333 CLCN1P35523 988 aa17.25■□□□□ 0.35
SCN3B-201ENST00000299333 GAS2L2Q8NHY3 880 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 ZNF830Q96NB3 372 aaPredicted RBP17.24■□□□□ 0.35
SCN3B-201ENST00000299333 NLRP2Q9NX02 1062 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 CEP131Q9UPN4 1083 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 USO1O60763 962 aaKnown RBP17.24■□□□□ 0.35
SCN3B-201ENST00000299333 HDGFL1Q5TGJ6 251 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 WDR66Q8TBY9 1149 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 ARID4AP29374 1257 aaPredicted RBP17.24■□□□□ 0.35
SCN3B-201ENST00000299333 JPH4Q96JJ6 628 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 CETN2P41208 172 aa17.24■□□□□ 0.35
SCN3B-201ENST00000299333 HSPA4P34932 840 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 CTNNBL1Q8WYA6 563 aaPredicted RBP17.23■□□□□ 0.35
SCN3B-201ENST00000299333 RRBP1Q9P2E9 1410 aaKnown RBP17.23■□□□□ 0.35
SCN3B-201ENST00000299333 SRGAP3O43295 1099 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 NEBLO76041 1014 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 CCDC184Q52MB2 194 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 NUTM1Q86Y26 1132 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 WASF1Q92558 559 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 UBAC1Q9BSL1 405 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 SERPINA10Q9UK55 444 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 FYCO1Q9BQS8 1478 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 YEATS4O95619 227 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 SETSIPP0DME0 302 aa17.23■□□□□ 0.35
SCN3B-201ENST00000299333 C11orf95C9JLR9 678 aaPredicted RBP17.22■□□□□ 0.35
SCN3B-201ENST00000299333 PRPF40BQ6NWY9 871 aaKnown RBP17.22■□□□□ 0.35
SCN3B-201ENST00000299333 MATR3P43243 847 aaKnown RBP eCLIP17.22■□□□□ 0.35
SCN3B-201ENST00000299333 DDX54Q8TDD1 881 aaKnown RBP17.22■□□□□ 0.35
SCN3B-201ENST00000299333 CTNNA3Q9UI47 895 aa17.22■□□□□ 0.35
SCN3B-201ENST00000299333 MPHOSPH10O00566 681 aaKnown RBP17.22■□□□□ 0.35
SCN3B-201ENST00000299333 IVLP07476 585 aa17.22■□□□□ 0.35
SCN3B-201ENST00000299333 WDR63Q8IWG1 891 aa17.22■□□□□ 0.35
SCN3B-201ENST00000299333 MICALL1Q8N3F8 863 aa17.22■□□□□ 0.35
SCN3B-201ENST00000299333 CCDC12Q8WUD4 166 aaPredicted RBP17.22■□□□□ 0.35
SCN3B-201ENST00000299333 GNG11P61952 73 aa17.21■□□□□ 0.35
SCN3B-201ENST00000299333 GUCY1B3Q02153 619 aa17.21■□□□□ 0.35
SCN3B-201ENST00000299333 PPM1EQ8WY54 764 aa17.21■□□□□ 0.35
SCN3B-201ENST00000299333 NAA15Q9BXJ9 866 aaKnown RBP17.21■□□□□ 0.35
SCN3B-201ENST00000299333 HMGB1P09429 215 aaKnown RBP17.21■□□□□ 0.35
SCN3B-201ENST00000299333 TDRD12Q587J7 1177 aaKnown RBP17.21■□□□□ 0.35
SCN3B-201ENST00000299333 BIN1O00499 593 aa17.21■□□□□ 0.35
SCN3B-201ENST00000299333 CTAGE5O15320 804 aa17.21■□□□□ 0.35
SCN3B-201ENST00000299333 ANAPC15P60006 121 aa17.21■□□□□ 0.35
SCN3B-201ENST00000299333 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.21■□□□□ 0.35
SCN3B-201ENST00000299333 IGF1RP08069 1367 aa17.21■□□□□ 0.34
SCN3B-201ENST00000299333 FBF1Q8TES7 1133 aa17.21■□□□□ 0.34
SCN3B-201ENST00000299333 ERICH3Q5RHP9 1530 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 DESP17661 470 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 TMEM132EQ6IEE7 984 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 TMEM57Q8N5G2 664 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 CEP112Q8N8E3 955 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 GNL3LQ9NVN8 582 aaKnown RBP17.2■□□□□ 0.34
SCN3B-201ENST00000299333 CASKIN1Q8WXD9 1431 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 MACROD2A1Z1Q3 448 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 IGSF3O75054 1194 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 KIF6Q6ZMV9 814 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 CCDC97Q96F63 343 aaPredicted RBP17.2■□□□□ 0.34
SCN3B-201ENST00000299333 ZSCAN25Q6NSZ9 544 aa17.2■□□□□ 0.34
SCN3B-201ENST00000299333 ZSCAN23Q3MJ62 389 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 RNF216Q9NWF9 866 aaPredicted RBP17.19■□□□□ 0.34
SCN3B-201ENST00000299333 NOLC1Q14978 699 aaKnown RBP eCLIP17.19■□□□□ 0.34
SCN3B-201ENST00000299333 VPS36Q86VN1 386 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 ALS2CR12Q96Q35 445 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 HSF2BPO75031 334 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 C6orf163Q5TEZ5 329 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 LARP1Q6PKG0 1096 aaKnown RBP17.19■□□□□ 0.34
SCN3B-201ENST00000299333 GTPBP4Q9BZE4 634 aaKnown RBP17.19■□□□□ 0.34
SCN3B-201ENST00000299333 DAAM2Q86T65 1068 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 CEP57Q86XR8 500 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 DDX19AQ9NUU7 478 aaKnown RBP17.19■□□□□ 0.34
SCN3B-201ENST00000299333 EXOC6BQ9Y2D4 811 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 SMARCA5O60264 1052 aaPredicted RBP17.19■□□□□ 0.34
SCN3B-201ENST00000299333 MCM6Q14566 821 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 HOMEZQ8IX15 550 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 JADE2Q9NQC1 790 aa17.19■□□□□ 0.34
SCN3B-201ENST00000299333 GOLGA6L9A6NEM1 432 aa17.18■□□□□ 0.34
SCN3B-201ENST00000299333 POTEJP0CG39 1038 aa17.18■□□□□ 0.34
SCN3B-201ENST00000299333 STX1AQ16623 288 aa17.18■□□□□ 0.34
SCN3B-201ENST00000299333 PPP1R12BO60237 982 aaPredicted RBP17.18■□□□□ 0.34
SCN3B-201ENST00000299333 HOOK3Q86VS8 718 aa17.18■□□□□ 0.34
SCN3B-201ENST00000299333 FSIP1Q8NA03 581 aa17.18■□□□□ 0.34
SCN3B-201ENST00000299333 BAG4O95429 457 aaKnown RBP17.18■□□□□ 0.34
SCN3B-201ENST00000299333 NLRP6P59044 892 aa17.18■□□□□ 0.34
SCN3B-201ENST00000299333 CNNM3Q8NE01 707 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms