RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 IFT57Q9NWB7 429 aa28.45■■■□□ 2.15
PDLIM3-203ENST00000284771 EP400Q96L91 3159 aa28.45■■■□□ 2.14
PDLIM3-203ENST00000284771 E9PSI1 815 aa28.45■■■□□ 2.14
PDLIM3-203ENST00000284771 TSR2Q969E8 191 aaKnown RBP28.45■■■□□ 2.14
PDLIM3-203ENST00000284771 MRC1P22897 1456 aa28.44■■■□□ 2.14
PDLIM3-203ENST00000284771 DUSP27Q5VZP5 1158 aa28.44■■■□□ 2.14
PDLIM3-203ENST00000284771 KRT27Q7Z3Y8 459 aa28.44■■■□□ 2.14
PDLIM3-203ENST00000284771 CABP4P57796 275 aa28.43■■■□□ 2.14
PDLIM3-203ENST00000284771 MBIPQ9NS73 344 aa28.43■■■□□ 2.14
PDLIM3-203ENST00000284771 ITGB4P16144 1822 aa28.42■■■□□ 2.14
PDLIM3-203ENST00000284771 GNAI1P63096 354 aa28.42■■■□□ 2.14
PDLIM3-203ENST00000284771 DOT1LQ8TEK3 1739 aa28.42■■■□□ 2.14
PDLIM3-203ENST00000284771 ACSBG1Q96GR2 724 aa28.42■■■□□ 2.14
PDLIM3-203ENST00000284771 PRIM1P49642 420 aaKnown RBP28.41■■■□□ 2.14
PDLIM3-203ENST00000284771 FANCIQ9NVI1 1328 aa28.41■■■□□ 2.14
PDLIM3-203ENST00000284771 BCL9O00512 1426 aa28.39■■■□□ 2.14
PDLIM3-203ENST00000284771 KCNQ2O43526 872 aa28.39■■■□□ 2.14
PDLIM3-203ENST00000284771 PIGBQ92521 554 aa28.39■■■□□ 2.14
PDLIM3-203ENST00000284771 BTBD11A6QL63 1104 aa28.38■■■□□ 2.13
PDLIM3-203ENST00000284771 KCNQ3O43525 872 aa28.38■■■□□ 2.13
PDLIM3-203ENST00000284771 MYH16Q9H6N6 1097 aa28.38■■■□□ 2.13
PDLIM3-203ENST00000284771 TSPYL4Q9UJ04 414 aa28.38■■■□□ 2.13
PDLIM3-203ENST00000284771 SLC39A6Q13433 755 aa28.37■■■□□ 2.13
PDLIM3-203ENST00000284771 PTF1AQ7RTS3 328 aa28.37■■■□□ 2.13
PDLIM3-203ENST00000284771 SYTL4Q96C24 671 aaPredicted RBP28.37■■■□□ 2.13
PDLIM3-203ENST00000284771 BABAM1Q9NWV8 329 aa28.36■■■□□ 2.13
PDLIM3-203ENST00000284771 TMOD3Q9NYL9 352 aa28.36■■■□□ 2.13
PDLIM3-203ENST00000284771 KDM3BQ7LBC6 1761 aa28.35■■■□□ 2.13
PDLIM3-203ENST00000284771 SBF2Q86WG5 1849 aa28.34■■■□□ 2.13
PDLIM3-203ENST00000284771 KRT24Q2M2I5 525 aa28.33■■■□□ 2.13
PDLIM3-203ENST00000284771 ZNF790Q6PG37 636 aa28.33■■■□□ 2.13
PDLIM3-203ENST00000284771 FAM196AQ6ZSG2 479 aa28.32■■■□□ 2.12
PDLIM3-203ENST00000284771 EXOSC9Q06265 439 aaKnown RBP28.32■■■□□ 2.12
PDLIM3-203ENST00000284771 ASAP1Q9ULH1 1129 aa28.32■■■□□ 2.12
PDLIM3-203ENST00000284771 C8orf58Q8NAV2 365 aa28.3■■■□□ 2.12
PDLIM3-203ENST00000284771 EIF4A1P60842 406 aaKnown RBP28.29■■■□□ 2.12
PDLIM3-203ENST00000284771 TSPYL6Q8N831 410 aa28.29■■■□□ 2.12
PDLIM3-203ENST00000284771 ATG3Q9NT62 314 aa28.29■■■□□ 2.12
PDLIM3-203ENST00000284771 PAPPAQ13219 1627 aa28.29■■■□□ 2.12
PDLIM3-203ENST00000284771 NHSQ6T4R5 1651 aa28.28■■■□□ 2.12
PDLIM3-203ENST00000284771 ELL2O00472 640 aaPredicted RBP28.26■■■□□ 2.12
PDLIM3-203ENST00000284771 ZNF496Q96IT1 587 aaPredicted RBP28.26■■■□□ 2.12
PDLIM3-203ENST00000284771 HEG1Q9ULI3 1381 aa28.25■■■□□ 2.11
PDLIM3-203ENST00000284771 UBR2Q8IWV8 1755 aa28.24■■■□□ 2.11
PDLIM3-203ENST00000284771 TTC5Q8N0Z6 440 aa28.24■■■□□ 2.11
PDLIM3-203ENST00000284771 TRIM37O94972 964 aa28.23■■■□□ 2.11
PDLIM3-203ENST00000284771 BCL11BQ9C0K0 894 aaPredicted RBP28.23■■■□□ 2.11
PDLIM3-203ENST00000284771 KCPQ6ZWJ8 1503 aa28.23■■■□□ 2.11
PDLIM3-203ENST00000284771 BTAF1O14981 1849 aa28.23■■■□□ 2.11
PDLIM3-203ENST00000284771 PRAMEF22A3QJZ6 481 aa28.22■■■□□ 2.11
PDLIM3-203ENST00000284771 PTCD1O75127 700 aaKnown RBP28.22■■■□□ 2.11
PDLIM3-203ENST00000284771 VAMP4O75379 141 aa28.22■■■□□ 2.11
PDLIM3-203ENST00000284771 GIGYF1O75420 1035 aaPredicted RBP28.2■■■□□ 2.11
PDLIM3-203ENST00000284771 TWISTNBQ3B726 338 aaPredicted RBP28.2■■■□□ 2.11
PDLIM3-203ENST00000284771 SLC4A9Q96Q91 983 aa28.19■■■□□ 2.1
PDLIM3-203ENST00000284771 FMNL2Q96PY5 1086 aa28.19■■■□□ 2.1
PDLIM3-203ENST00000284771 CENPBP07199 599 aaPredicted RBP28.16■■■□□ 2.1
PDLIM3-203ENST00000284771 PALLDQ8WX93 1383 aa28.16■■■□□ 2.1
PDLIM3-203ENST00000284771 RBM42Q9BTD8 480 aaKnown RBP28.16■■■□□ 2.1
PDLIM3-203ENST00000284771 C5P01031 1676 aa28.14■■■□□ 2.1
PDLIM3-203ENST00000284771 CT47B1P0C2W7 299 aaPredicted RBP28.14■■■□□ 2.1
PDLIM3-203ENST00000284771 USP16Q9Y5T5 823 aa28.14■■■□□ 2.1
PDLIM3-203ENST00000284771 SNRPA1P09661 255 aaKnown RBP28.13■■■□□ 2.09
PDLIM3-203ENST00000284771 SMARCC1Q92922 1105 aaPredicted RBP28.13■■■□□ 2.09
PDLIM3-203ENST00000284771 LOC102724428A0A0B4J2F2 783 aa28.11■■■□□ 2.09
PDLIM3-203ENST00000284771 HOXB7P09629 217 aa28.11■■■□□ 2.09
PDLIM3-203ENST00000284771 RARSP54136 660 aaKnown RBP28.11■■■□□ 2.09
PDLIM3-203ENST00000284771 SIK1P57059 783 aa28.11■■■□□ 2.09
PDLIM3-203ENST00000284771 VSIG10Q8N0Z9 540 aa28.11■■■□□ 2.09
PDLIM3-203ENST00000284771 RCAN3Q9UKA8 241 aa28.11■■■□□ 2.09
PDLIM3-203ENST00000284771 TCERG1O14776 1098 aaKnown RBP28.1■■■□□ 2.09
PDLIM3-203ENST00000284771 NECTIN2Q92692 538 aa28.1■■■□□ 2.09
PDLIM3-203ENST00000284771 EIF2S2P20042 333 aaKnown RBP28.1■■■□□ 2.09
PDLIM3-203ENST00000284771 SOS1Q07889 1333 aaPredicted RBP28.09■■■□□ 2.09
PDLIM3-203ENST00000284771 KCNQ4P56696 695 aa28.09■■■□□ 2.09
PDLIM3-203ENST00000284771 DNAJC10Q8IXB1 793 aa28.09■■■□□ 2.09
PDLIM3-203ENST00000284771 SSH1Q8WYL5 1049 aa28.09■■■□□ 2.09
PDLIM3-203ENST00000284771 LY75O60449 1722 aa28.08■■■□□ 2.09
PDLIM3-203ENST00000284771 BCAR3O75815 825 aa28.08■■■□□ 2.09
PDLIM3-203ENST00000284771 BCL2L13Q9BXK5 485 aa28.08■■■□□ 2.09
PDLIM3-203ENST00000284771 TNS1Q9HBL0 1735 aaKnown RBP28.08■■■□□ 2.09
PDLIM3-203ENST00000284771 ATP6V1AP38606 617 aa28.07■■■□□ 2.08
PDLIM3-203ENST00000284771 ITPK1Q13572 414 aa28.07■■■□□ 2.08
PDLIM3-203ENST00000284771 HDGFL1Q5TGJ6 251 aa28.07■■■□□ 2.08
PDLIM3-203ENST00000284771 ZNF428Q96B54 188 aa28.07■■■□□ 2.08
PDLIM3-203ENST00000284771 TJP1Q07157 1748 aa28.06■■■□□ 2.08
PDLIM3-203ENST00000284771 APBA3O96018 575 aa28.06■■■□□ 2.08
PDLIM3-203ENST00000284771 PROM2Q8N271 834 aa28.04■■■□□ 2.08
PDLIM3-203ENST00000284771 PLSCR1O15162 318 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 LAMB4A4D0S4 1761 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 ZNF831Q5JPB2 1677 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 PDIA6Q15084 440 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 ALDH1L2Q3SY69 923 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 CCDC30Q5VVM6 783 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 LRRC4BQ9NT99 713 aa28.03■■■□□ 2.08
PDLIM3-203ENST00000284771 CYP19A1P11511 503 aaPredicted RBP28.02■■■□□ 2.08
PDLIM3-203ENST00000284771 TEX13AQ9BXU3 409 aaPredicted RBP28.02■■■□□ 2.08
PDLIM3-203ENST00000284771 CHPF2Q9P2E5 772 aa28.02■■■□□ 2.08
PDLIM3-203ENST00000284771 CICQ96RK0 1608 aaPredicted RBP28.02■■■□□ 2.08
PDLIM3-203ENST00000284771 A1BGP04217 495 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms