RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 LARP1Q6PKG0 1096 aaKnown RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 MTERF4Q7Z6M4 381 aaKnown RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 KCNH5Q8NCM2 988 aa13.44□□□□□ -0.26
USP53-201ENST00000274030 LUC7LQ9NQ29 371 aaKnown RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 CBFA2T2O43439 604 aa13.44□□□□□ -0.26
USP53-201ENST00000274030 TAX1BP1Q86VP1 789 aa13.44□□□□□ -0.26
USP53-201ENST00000274030 MAP3K11Q16584 847 aa13.44□□□□□ -0.26
USP53-201ENST00000274030 CCDC191Q8NCU4 936 aa13.44□□□□□ -0.26
USP53-201ENST00000274030 SNAPC4Q5SXM2 1469 aa13.44□□□□□ -0.26
USP53-201ENST00000274030 FBXO31Q5XUX0 539 aaPredicted RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 CWC15Q9P013 229 aaKnown RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
USP53-201ENST00000274030 POLR3DP05423 398 aaPredicted RBP13.43□□□□□ -0.26
USP53-201ENST00000274030 UQCRHLA0A096LP55 91 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 ERLIN2O94905 339 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 UQCRHP07919 91 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 GPTP24298 496 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 LEKR1Q6ZMV7 388 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 MKNK2Q9HBH9 465 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 DCAF8L1A6NGE4 600 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 CHMP4BP1P59074 171 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 NAPBQ9H115 298 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 CIZ1Q9ULV3 898 aaPredicted RBP13.43□□□□□ -0.26
USP53-201ENST00000274030 GOLGA6L10A6NI86 522 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 ANKIB1Q9P2G1 1089 aa13.43□□□□□ -0.26
USP53-201ENST00000274030 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
USP53-201ENST00000274030 RAB11FIP3O75154 756 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 CEBPAP49715 358 aaPredicted RBP13.42□□□□□ -0.26
USP53-201ENST00000274030 RANBP6O60518 1105 aaKnown RBP13.42□□□□□ -0.26
USP53-201ENST00000274030 TSHZ3Q63HK5 1081 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 ZBTB3Q9H5J0 574 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 ADGRF5Q8IZF2 1346 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 ESPNB1AK53 854 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 FBLN1P23142 703 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 WASF1Q92558 559 aa13.42□□□□□ -0.26
USP53-201ENST00000274030 JARID2Q92833 1246 aaPredicted RBP13.42□□□□□ -0.26
USP53-201ENST00000274030 TRMT112Q9UI30 125 aaKnown RBP13.42□□□□□ -0.26
USP53-201ENST00000274030 SSR1P43307 286 aaKnown RBP13.41□□□□□ -0.26
USP53-201ENST00000274030 CAVIN4Q5BKX8 364 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 AKAP2Q9Y2D5 859 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 CCT2P78371 535 aaKnown RBP13.41□□□□□ -0.26
USP53-201ENST00000274030 IFIT5Q13325 482 aaKnown RBP13.41□□□□□ -0.26
USP53-201ENST00000274030 EPB41L2O43491 1005 aaKnown RBP13.41□□□□□ -0.26
USP53-201ENST00000274030 ZPR1O75312 459 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 SEPT7Q16181 437 aaKnown RBP13.41□□□□□ -0.26
USP53-201ENST00000274030 KIAA1328Q86T90 577 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 PLCD4Q9BRC7 762 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 GDPD2Q9HCC8 539 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 ARHGEF11O15085 1522 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 A0A087WZG4 1122 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 TAF3Q5VWG9 929 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 CRACR2BQ8N4Y2 399 aaPredicted RBP13.41□□□□□ -0.26
USP53-201ENST00000274030 DNAAF4Q8WXU2 420 aa13.41□□□□□ -0.26
USP53-201ENST00000274030 FAM83GA6ND36 823 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 SNRKQ9NRH2 765 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 NAIPQ13075 1403 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 ENOX2Q16206 610 aaKnown RBP13.4□□□□□ -0.26
USP53-201ENST00000274030 ARHGAP29Q52LW3 1261 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 SSFA2P28290 1259 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 SMTNL1A8MU46 457 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 ATP5J2-PTCD1G3V325 749 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 TRIM27P14373 513 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 SLC4A8Q2Y0W8 1093 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 TRMT1LQ7Z2T5 733 aaKnown RBP13.4□□□□□ -0.26
USP53-201ENST00000274030 CKAP2LQ8IYA6 745 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 AMOTL2Q9Y2J4 779 aa13.4□□□□□ -0.26
USP53-201ENST00000274030 DZIP1Q86YF9 867 aaKnown RBP13.4□□□□□ -0.27
USP53-201ENST00000274030 ANXA1P04083 346 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 RAB11FIP4Q86YS3 637 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 C8orf76Q96K31 380 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 TMOD2Q9NZR1 351 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 PHF8Q9UPP1 1060 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 PRXQ9BXM0 1461 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 TIAM1Q13009 1591 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 POLA1P09884 1462 aaPredicted RBP13.39□□□□□ -0.27
USP53-201ENST00000274030 CCDC144CPQ8IYA2 1237 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 UBA5Q9GZZ9 404 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 SEC63Q9UGP8 760 aaKnown RBP13.39□□□□□ -0.27
USP53-201ENST00000274030 EFCAB5A4FU69 1503 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 MRC2Q9UBG0 1479 aa13.39□□□□□ -0.27
USP53-201ENST00000274030 ALDH1L2Q3SY69 923 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 TFIP11Q9UBB9 837 aaKnown RBP13.38□□□□□ -0.27
USP53-201ENST00000274030 ZNF652Q9Y2D9 606 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 ZNF213O14771 459 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 DNA2P51530 1060 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 CCDC102AQ96A19 550 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 TOPBP1Q92547 1522 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 CCDC66A2RUB6 948 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 FLIIQ13045 1269 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 CEP131Q9UPN4 1083 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 ERLIN1O75477 346 aa13.38□□□□□ -0.27
USP53-201ENST00000274030 MAP3K12Q12852 859 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 IDI1Q13907 227 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 IFT140Q96RY7 1462 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 HECW1Q76N89 1606 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 HAND2P61296 217 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 PANK2Q9BZ23 570 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 TMX1Q9H3N1 280 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 GOLIM4O00461 696 aa13.37□□□□□ -0.27
USP53-201ENST00000274030 CCDC96Q2M329 555 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms