RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 MYOM1P52179 1685 aa13.97□□□□□ -0.17
CLSTN3-201ENST00000266546 GCC1Q96CN9 775 aa13.97□□□□□ -0.17
CLSTN3-201ENST00000266546 TAF7Q15545 349 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-201ENST00000266546 ANKRD24Q8TF21 1146 aa13.96□□□□□ -0.17
CLSTN3-201ENST00000266546 EYA1Q99502 592 aa13.96□□□□□ -0.17
CLSTN3-201ENST00000266546 TRMT2AQ8IZ69 625 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-201ENST00000266546 PLEKHF1Q96S99 279 aa13.96□□□□□ -0.17
CLSTN3-201ENST00000266546 CHD1LQ86WJ1 897 aa13.96□□□□□ -0.18
CLSTN3-201ENST00000266546 SSH1Q8WYL5 1049 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 TNPO1Q92973 898 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 PDCL3Q9H2J4 239 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 ANO2Q9NQ90 1003 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 UQCRHLA0A096LP55 91 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 DDX58O95786 925 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 UQCRHP07919 91 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 MCM10Q7L590 875 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 PHACTR3Q96KR7 559 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 KNDC1Q76NI1 1749 aa13.95□□□□□ -0.18
CLSTN3-201ENST00000266546 ZNF771Q7L3S4 317 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 AEBP1Q8IUX7 1158 aa13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 C1orf115Q9H7X2 142 aa13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 EIF2S2P20042 333 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 TOM1L2Q6ZVM7 507 aa13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 ARHGAP45Q92619 1136 aa13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 BABAM1Q9NWV8 329 aa13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 TRIM35Q9UPQ4 493 aa13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 SOS1Q07889 1333 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-201ENST00000266546 TAOK2Q9UL54 1235 aa13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 NCOA3Q9Y6Q9 1424 aa13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 HMGN5P82970 282 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 FKBP5Q13451 457 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 RRAGDQ9NQL2 400 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 MBIPQ9NS73 344 aa13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 DCTN1Q14203 1278 aa13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 CWC22Q9HCG8 908 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-201ENST00000266546 SPINK5Q9NQ38 1064 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 DIAPH3Q9NSV4 1193 aa13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 NEK4P51957 841 aa13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 KLHL34Q8N239 644 aa13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 KDM2BQ8NHM5 1336 aa13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 NUTM2BA6NNL0 878 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 NUTM2EB1AL46 878 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 SEC24BO95487 1268 aa13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 NUTM2AQ8IVF1 878 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 SYTL4Q96C24 671 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 TSPY26PQ9H489 355 aa13.92□□□□□ -0.18
CLSTN3-201ENST00000266546 CCT4P50991 539 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-201ENST00000266546 CD163L1Q9NR16 1453 aa13.91□□□□□ -0.18
CLSTN3-201ENST00000266546 ITSN1Q15811 1721 aa13.91□□□□□ -0.18
CLSTN3-201ENST00000266546 HDGFL1Q5TGJ6 251 aa13.91□□□□□ -0.18
CLSTN3-201ENST00000266546 MTHFSDQ2M296 383 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-201ENST00000266546 SLC4A2P04920 1241 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 GTF2E1P29083 439 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 AKAP4Q5JQC9 854 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 TMEM57Q8N5G2 664 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 SLAIN2Q9P270 581 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 PCDHB15Q9Y5E8 787 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 GNAI3P08754 354 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 USHBP1Q8N6Y0 703 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 BTBD11A6QL63 1104 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 PTPRCP08575 1304 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 ADGRB2O60241 1585 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 MAP3K5Q99683 1374 aa13.9□□□□□ -0.18
CLSTN3-201ENST00000266546 NEXNQ0ZGT2 675 aa13.9□□□□□ -0.19
CLSTN3-201ENST00000266546 ZNF592Q92610 1267 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 OVOS2A0A0J9YW53 1432 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 OVOS2Q6IE36 1432 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 IGSF1Q8N6C5 1336 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 FAM83GA6ND36 823 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 SSFA2P28290 1259 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 TNNT3P45378 269 aaPredicted RBP13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 TMX4Q9H1E5 349 aaPredicted RBP13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 CHMP3Q9Y3E7 222 aa13.89□□□□□ -0.19
CLSTN3-201ENST00000266546 MPNDQ8N594 471 aa13.88□□□□□ -0.19
CLSTN3-201ENST00000266546 GOLGA6L19H0YKK7 550 aa13.88□□□□□ -0.19
CLSTN3-201ENST00000266546 STRN4Q9NRL3 753 aa13.88□□□□□ -0.19
CLSTN3-201ENST00000266546 MCM2P49736 904 aa13.88□□□□□ -0.19
CLSTN3-201ENST00000266546 IFNL2Q8IZJ0 200 aa13.88□□□□□ -0.19
CLSTN3-201ENST00000266546 A0A0U1RQG5 324 aaPredicted RBP13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 GPATCH3Q96I76 525 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 TRIM27P14373 513 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 CABP4P57796 275 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 ARHGEF25Q86VW2 580 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 SMC3Q9UQE7 1217 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 NRXN3Q9Y4C0 1643 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 KIF20BQ96Q89 1820 aa13.87□□□□□ -0.19
CLSTN3-201ENST00000266546 TOM1O60784 492 aa13.86□□□□□ -0.19
CLSTN3-201ENST00000266546 VAMP4O75379 141 aa13.86□□□□□ -0.19
CLSTN3-201ENST00000266546 LRRC59Q96AG4 307 aaKnown RBP13.86□□□□□ -0.19
CLSTN3-201ENST00000266546 ADAMTSL3P82987 1691 aa13.86□□□□□ -0.19
CLSTN3-201ENST00000266546 CHL1O00533 1208 aa13.86□□□□□ -0.19
CLSTN3-201ENST00000266546 BECN2A8MW95 431 aa13.86□□□□□ -0.19
CLSTN3-201ENST00000266546 DCCP43146 1447 aa13.85□□□□□ -0.19
CLSTN3-201ENST00000266546 SYCE3A1L190 88 aa13.85□□□□□ -0.19
CLSTN3-201ENST00000266546 VPS37CA5D8V6 355 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-201ENST00000266546 C1orf167Q5SNV9 1468 aa13.85□□□□□ -0.19
CLSTN3-201ENST00000266546 TPM4P67936 248 aa13.84□□□□□ -0.19
CLSTN3-201ENST00000266546 KIAA0232Q92628 1395 aa13.84□□□□□ -0.19
CLSTN3-201ENST00000266546 HSP90B1P14625 803 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-201ENST00000266546 MRPL50Q8N5N7 158 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms