RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 SURF6O75683 361 aaKnown RBP19.9■□□□□ 0.78
CTCF-201ENST00000264010 OVOS2A0A0J9YW53 1432 aa19.89■□□□□ 0.78
CTCF-201ENST00000264010 OVOS2Q6IE36 1432 aa19.89■□□□□ 0.78
CTCF-201ENST00000264010 MAP2P11137 1827 aaKnown RBP19.89■□□□□ 0.78
CTCF-201ENST00000264010 BABAM1Q9NWV8 329 aa19.89■□□□□ 0.77
CTCF-201ENST00000264010 K7ELQ4 463 aaPredicted RBP19.89■□□□□ 0.77
CTCF-201ENST00000264010 ANKARQ7Z5J8 1434 aa19.89■□□□□ 0.77
CTCF-201ENST00000264010 G2E3Q7L622 706 aa19.88■□□□□ 0.77
CTCF-201ENST00000264010 MSH6P52701 1360 aa19.88■□□□□ 0.77
CTCF-201ENST00000264010 ERC2O15083 957 aa19.88■□□□□ 0.77
CTCF-201ENST00000264010 CIZ1Q9ULV3 898 aaPredicted RBP19.88■□□□□ 0.77
CTCF-201ENST00000264010 PLEKHM2Q8IWE5 1019 aa19.88■□□□□ 0.77
CTCF-201ENST00000264010 MCM4P33991 863 aa19.87■□□□□ 0.77
CTCF-201ENST00000264010 PTPRUQ92729 1446 aa19.87■□□□□ 0.77
CTCF-201ENST00000264010 ANO2Q9NQ90 1003 aa19.86■□□□□ 0.77
CTCF-201ENST00000264010 RBM25P49756 843 aaKnown RBP19.86■□□□□ 0.77
CTCF-201ENST00000264010 KRT28Q7Z3Y7 464 aa19.86■□□□□ 0.77
CTCF-201ENST00000264010 FAM43AQ8N2R8 423 aa19.86■□□□□ 0.77
CTCF-201ENST00000264010 ITSN1Q15811 1721 aa19.86■□□□□ 0.77
CTCF-201ENST00000264010 NEXNQ0ZGT2 675 aa19.85■□□□□ 0.77
CTCF-201ENST00000264010 MPRIPQ6WCQ1 1025 aa19.85■□□□□ 0.77
CTCF-201ENST00000264010 C16orf71Q8IYS4 520 aaPredicted RBP19.85■□□□□ 0.77
CTCF-201ENST00000264010 LRRFIP2Q9Y608 721 aaKnown RBP19.85■□□□□ 0.77
CTCF-201ENST00000264010 KCNJ4P48050 445 aa19.85■□□□□ 0.77
CTCF-201ENST00000264010 SKOR2Q2VWA4 1001 aaPredicted RBP19.85■□□□□ 0.77
CTCF-201ENST00000264010 SNX21Q969T3 373 aa19.85■□□□□ 0.77
CTCF-201ENST00000264010 TTC5Q8N0Z6 440 aa19.84■□□□□ 0.77
CTCF-201ENST00000264010 ZC3H6P61129 1189 aaKnown RBP19.84■□□□□ 0.77
CTCF-201ENST00000264010 TATP17735 454 aaPredicted RBP19.84■□□□□ 0.77
CTCF-201ENST00000264010 SIRT2Q8IXJ6 389 aa19.83■□□□□ 0.77
CTCF-201ENST00000264010 TRAK2O60296 914 aa19.83■□□□□ 0.76
CTCF-201ENST00000264010 AKAP4Q5JQC9 854 aa19.83■□□□□ 0.76
CTCF-201ENST00000264010 ANKRD24Q8TF21 1146 aa19.83■□□□□ 0.76
CTCF-201ENST00000264010 NUCB2P80303 420 aa19.83■□□□□ 0.76
CTCF-201ENST00000264010 SRGAP3O43295 1099 aa19.82■□□□□ 0.76
CTCF-201ENST00000264010 GCP02774 474 aa19.82■□□□□ 0.76
CTCF-201ENST00000264010 MX1P20591 662 aa19.82■□□□□ 0.76
CTCF-201ENST00000264010 SDSP20132 328 aa19.82■□□□□ 0.76
CTCF-201ENST00000264010 DNAAF4Q8WXU2 420 aa19.82■□□□□ 0.76
CTCF-201ENST00000264010 RTL1A6NKG5 1358 aa19.81■□□□□ 0.76
CTCF-201ENST00000264010 AIMP1Q12904 312 aaKnown RBP19.81■□□□□ 0.76
CTCF-201ENST00000264010 IL17REQ8NFR9 667 aa19.81■□□□□ 0.76
CTCF-201ENST00000264010 ATP8B2P98198 1209 aa19.81■□□□□ 0.76
CTCF-201ENST00000264010 LRRC59Q96AG4 307 aaKnown RBP19.81■□□□□ 0.76
CTCF-201ENST00000264010 RAB11FIP3O75154 756 aa19.8■□□□□ 0.76
CTCF-201ENST00000264010 IFIT2P09913 472 aaKnown RBP19.8■□□□□ 0.76
CTCF-201ENST00000264010 RIC3Q7Z5B4 369 aa19.8■□□□□ 0.76
CTCF-201ENST00000264010 DBF4Q9UBU7 674 aaPredicted RBP19.8■□□□□ 0.76
CTCF-201ENST00000264010 IL1RAPL2Q9NP60 686 aa19.8■□□□□ 0.76
CTCF-201ENST00000264010 SPG7Q9UQ90 795 aa19.8■□□□□ 0.76
CTCF-201ENST00000264010 CLASRPQ8N2M8 674 aaKnown RBP19.79■□□□□ 0.76
CTCF-201ENST00000264010 PRDM10Q9NQV6 1147 aa19.79■□□□□ 0.76
CTCF-201ENST00000264010 PDE1AP54750 535 aa19.79■□□□□ 0.76
CTCF-201ENST00000264010 NBPF6Q5VWK0 638 aa19.79■□□□□ 0.76
CTCF-201ENST00000264010 NOL8Q76FK4 1167 aaKnown RBP19.79■□□□□ 0.76
CTCF-201ENST00000264010 NBPF4Q96M43 638 aa19.79■□□□□ 0.76
CTCF-201ENST00000264010 G3BP1Q13283 466 aaKnown RBP eCLIP19.79■□□□□ 0.763e-6■■□□□ 11.7
CTCF-201ENST00000264010 RUFY2Q8WXA3 655 aa19.79■□□□□ 0.76
CTCF-201ENST00000264010 DIAPH3Q9NSV4 1193 aa19.79■□□□□ 0.76
CTCF-201ENST00000264010 ORAI2Q96SN7 254 aa19.78■□□□□ 0.76
CTCF-201ENST00000264010 UBR1Q8IWV7 1749 aa19.78■□□□□ 0.76
CTCF-201ENST00000264010 CNTROBQ8N137 903 aa19.77■□□□□ 0.76
CTCF-201ENST00000264010 KIF1BPQ96EK5 621 aa19.77■□□□□ 0.76
CTCF-201ENST00000264010 ZHX1Q9UKY1 873 aaPredicted RBP19.77■□□□□ 0.76
CTCF-201ENST00000264010 PI4KAP2A4QPH2 592 aa19.77■□□□□ 0.75
CTCF-201ENST00000264010 RRP9O43818 475 aaKnown RBP19.77■□□□□ 0.75
CTCF-201ENST00000264010 NEK4P51957 841 aa19.77■□□□□ 0.75
CTCF-201ENST00000264010 PI4KAP1Q8N8J0 262 aa19.77■□□□□ 0.75
CTCF-201ENST00000264010 CHPF2Q9P2E5 772 aa19.77■□□□□ 0.75
CTCF-201ENST00000264010 MCM2P49736 904 aa19.76■□□□□ 0.75
CTCF-201ENST00000264010 OTUD7AQ8TE49 926 aaPredicted RBP19.76■□□□□ 0.75
CTCF-201ENST00000264010 DIP2AQ14689 1571 aa19.76■□□□□ 0.75
CTCF-201ENST00000264010 NRXN3Q9Y4C0 1643 aa19.76■□□□□ 0.75
CTCF-201ENST00000264010 C19orf44Q9H6X5 657 aa19.76■□□□□ 0.75
CTCF-201ENST00000264010 DDX49Q9Y6V7 483 aaKnown RBP19.76■□□□□ 0.75
CTCF-201ENST00000264010 HOXB7P09629 217 aa19.76■□□□□ 0.75
CTCF-201ENST00000264010 TNNT3P45378 269 aaPredicted RBP19.76■□□□□ 0.75
CTCF-201ENST00000264010 ERC1Q8IUD2 1116 aa19.75■□□□□ 0.75
CTCF-201ENST00000264010 PPP1R42Q7Z4L9 355 aa19.75■□□□□ 0.75
CTCF-201ENST00000264010 KNDC1Q76NI1 1749 aa19.75■□□□□ 0.75
CTCF-201ENST00000264010 CWC22Q9HCG8 908 aaKnown RBP19.75■□□□□ 0.75
CTCF-201ENST00000264010 CRB1P82279 1406 aa19.75■□□□□ 0.75
CTCF-201ENST00000264010 SLIT1O75093 1534 aa19.74■□□□□ 0.75
CTCF-201ENST00000264010 PHAXQ9H814 394 aaKnown RBP19.74■□□□□ 0.75
CTCF-201ENST00000264010 LGR6Q9HBX8 967 aa19.74■□□□□ 0.75
CTCF-201ENST00000264010 KDRP35968 1356 aa19.74■□□□□ 0.75
CTCF-201ENST00000264010 GSPT1P15170 499 aaKnown RBP19.74■□□□□ 0.75
CTCF-201ENST00000264010 NUTM1Q86Y26 1132 aa19.74■□□□□ 0.75
CTCF-201ENST00000264010 ARHGAP23Q9P227 1491 aa19.74■□□□□ 0.75
CTCF-201ENST00000264010 ANXA1P04083 346 aa19.73■□□□□ 0.75
CTCF-201ENST00000264010 HYPKQ9NX55 129 aa19.73■□□□□ 0.75
CTCF-201ENST00000264010 RBM42Q9BTD8 480 aaKnown RBP19.73■□□□□ 0.75
CTCF-201ENST00000264010 R3HCC1Q9Y3T6 440 aaKnown RBP19.73■□□□□ 0.75
CTCF-201ENST00000264010 RNMTO43148 476 aaKnown RBP19.72■□□□□ 0.75
CTCF-201ENST00000264010 TSHZ3Q63HK5 1081 aa19.72■□□□□ 0.75
CTCF-201ENST00000264010 KIF13AQ9H1H9 1805 aa19.71■□□□□ 0.75
CTCF-201ENST00000264010 EIF4A1P60842 406 aaKnown RBP19.71■□□□□ 0.75
CTCF-201ENST00000264010 TNPO1Q92973 898 aaKnown RBP19.71■□□□□ 0.75
CTCF-201ENST00000264010 USP26Q9BXU7 913 aa19.71■□□□□ 0.75
CTCF-201ENST00000264010 CHMP3Q9Y3E7 222 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms