RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 FMNL2Q96PY5 1086 aa10.07□□□□□ -0.8
PTPN3-201ENST00000262539 TMEM57Q8N5G2 664 aa10.06□□□□□ -0.8
PTPN3-201ENST00000262539 PHACTR3Q96KR7 559 aa10.06□□□□□ -0.8
PTPN3-201ENST00000262539 KIAA1211Q6ZU35 1233 aa10.06□□□□□ -0.8
PTPN3-201ENST00000262539 CLASRPQ8N2M8 674 aaKnown RBP10.06□□□□□ -0.8
PTPN3-201ENST00000262539 C9orf78Q9NZ63 289 aaPredicted RBP10.06□□□□□ -0.8
PTPN3-201ENST00000262539 AOX1Q06278 1338 aa10.06□□□□□ -0.8
PTPN3-201ENST00000262539 ARHGEF28Q8N1W1 1705 aaKnown RBP10.06□□□□□ -0.8
PTPN3-201ENST00000262539 ELL2O00472 640 aaPredicted RBP10.06□□□□□ -0.8
PTPN3-201ENST00000262539 MTHFSDQ2M296 383 aaKnown RBP10.06□□□□□ -0.8
PTPN3-201ENST00000262539 HSP90AB3PQ58FF7 597 aa10.06□□□□□ -0.8
PTPN3-201ENST00000262539 LINS1Q8NG48 757 aa10.06□□□□□ -0.8
PTPN3-201ENST00000262539 CTDP1Q9Y5B0 961 aaPredicted RBP10.06□□□□□ -0.8
PTPN3-201ENST00000262539 ST18O60284 1047 aa10.05□□□□□ -0.8
PTPN3-201ENST00000262539 COL3A1P02461 1466 aaPredicted RBP10.05□□□□□ -0.8
PTPN3-201ENST00000262539 C1orf167Q5SNV9 1468 aa10.05□□□□□ -0.8
PTPN3-201ENST00000262539 CHAF1AQ13111 956 aaPredicted RBP10.05□□□□□ -0.8
PTPN3-201ENST00000262539 CHD1LQ86WJ1 897 aa10.05□□□□□ -0.8
PTPN3-201ENST00000262539 DNAAF4Q8WXU2 420 aa10.05□□□□□ -0.8
PTPN3-201ENST00000262539 FBXW7Q969H0 707 aa10.05□□□□□ -0.8
PTPN3-201ENST00000262539 DCTPP1Q9H773 170 aa10.05□□□□□ -0.8
PTPN3-201ENST00000262539 ANKRD45Q5TZF3 282 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 DRC7Q8IY82 874 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 RABEP1Q15276 862 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 TRIM34Q9BYJ4 488 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 SLC4A10Q6U841 1118 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 KIF3AQ9Y496 699 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 ERBB3P21860 1342 aa10.04□□□□□ -0.8
PTPN3-201ENST00000262539 SNRPA1P09661 255 aaKnown RBP10.04□□□□□ -0.8
PTPN3-201ENST00000262539 DDX21Q9NR30 783 aaKnown RBP eCLIP10.04□□□□□ -0.8
PTPN3-201ENST00000262539 TOM1O60784 492 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 L1TD1Q5T7N2 865 aaKnown RBP10.03□□□□□ -0.8
PTPN3-201ENST00000262539 GBP4Q96PP9 640 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 G3BP1Q13283 466 aaKnown RBP eCLIP10.03□□□□□ -0.8
PTPN3-201ENST00000262539 MARCH6O60337 910 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 CPDO75976 1380 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 KNDC1Q76NI1 1749 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 BTBD11A6QL63 1104 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 RAD21O60216 631 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 KIF1BPQ96EK5 621 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 PCDH11XQ9BZA7 1347 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 PCDH11YQ9BZA8 1340 aa10.03□□□□□ -0.8
PTPN3-201ENST00000262539 RASSF8Q8NHQ8 419 aa10.02□□□□□ -0.8
PTPN3-201ENST00000262539 FBXO3Q9UK99 471 aa10.02□□□□□ -0.8
PTPN3-201ENST00000262539 SPINK5Q9NQ38 1064 aaPredicted RBP10.02□□□□□ -0.81
PTPN3-201ENST00000262539 SLAIN2Q9P270 581 aa10.02□□□□□ -0.81
PTPN3-201ENST00000262539 IBTKQ9P2D0 1353 aaPredicted RBP10.02□□□□□ -0.81
PTPN3-201ENST00000262539 TOM1L2Q6ZVM7 507 aa10.02□□□□□ -0.81
PTPN3-201ENST00000262539 AEBP1Q8IUX7 1158 aa10.02□□□□□ -0.81
PTPN3-201ENST00000262539 KSR2Q6VAB6 950 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 LRRCC1Q9C099 1032 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 SPATA31A3Q5VYP0 1347 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 NCKAP5LQ9HCH0 1330 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 ERVV-2B6SEH9 535 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 CABP4P57796 275 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 MCM10Q7L590 875 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 TCEAL9Q9UHQ7 104 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 MFAP1P55081 439 aaKnown RBP10.01□□□□□ -0.81
PTPN3-201ENST00000262539 TOMM22Q9NS69 142 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 MST1RQ04912 1400 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 TNS3Q68CZ2 1445 aa10.01□□□□□ -0.81
PTPN3-201ENST00000262539 ZBTB7BO15156 539 aaPredicted RBP10□□□□□ -0.81
PTPN3-201ENST00000262539 NUCB1Q02818 461 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 RNF20Q5VTR2 975 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 TSPOAP1O95153 1857 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 GLRX3O76003 335 aaKnown RBP10□□□□□ -0.81
PTPN3-201ENST00000262539 ABCC6O95255 1503 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 C20orf194Q5TEA3 1177 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 SMARCC1Q92922 1105 aaPredicted RBP10□□□□□ -0.81
PTPN3-201ENST00000262539 C22orf23Q9BZE7 217 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 CHMP5Q9NZZ3 219 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 RNMTO43148 476 aaKnown RBP10□□□□□ -0.81
PTPN3-201ENST00000262539 IGSF3O75054 1194 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 ATP8B2P98198 1209 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 ATP6V1DQ9Y5K8 247 aa10□□□□□ -0.81
PTPN3-201ENST00000262539 STARD3NLO95772 234 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 IL2RBP14784 551 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 SKOR2Q2VWA4 1001 aaPredicted RBP9.99□□□□□ -0.81
PTPN3-201ENST00000262539 C8orf58Q8NAV2 365 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 ZRANB1Q9UGI0 708 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 ZKSCAN1P17029 563 aaPredicted RBP9.99□□□□□ -0.81
PTPN3-201ENST00000262539 RIC3Q7Z5B4 369 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 WDR17Q8IZU2 1322 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 ANAPC15P60006 121 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 ORAI2Q96SN7 254 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 CARD10Q9BWT7 1032 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 IFIT2P09913 472 aaKnown RBP9.99□□□□□ -0.81
PTPN3-201ENST00000262539 NUCB2P80303 420 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 NUTM2GQ5VZR2 741 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 CREBRFQ8IUR6 639 aa9.99□□□□□ -0.81
PTPN3-201ENST00000262539 ZC3H6P61129 1189 aaKnown RBP9.98□□□□□ -0.81
PTPN3-201ENST00000262539 LNPKQ9C0E8 428 aa9.98□□□□□ -0.81
PTPN3-201ENST00000262539 TTC41PQ6P2S7 1318 aa9.98□□□□□ -0.81
PTPN3-201ENST00000262539 VSIG10Q8N0Z9 540 aa9.98□□□□□ -0.81
PTPN3-201ENST00000262539 THUMPD2Q9BTF0 503 aaKnown RBP9.98□□□□□ -0.81
PTPN3-201ENST00000262539 ZCRB1Q8TBF4 217 aaKnown RBP9.98□□□□□ -0.81
PTPN3-201ENST00000262539 SYTL4Q96C24 671 aaPredicted RBP9.98□□□□□ -0.81
PTPN3-201ENST00000262539 DDX11L8A8MPP1 907 aa9.98□□□□□ -0.81
PTPN3-201ENST00000262539 PCDHB15Q9Y5E8 787 aa9.98□□□□□ -0.81
PTPN3-201ENST00000262539 EIF2S2P20042 333 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms