RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 GNAT3A8MTJ3 354 aa18.71■□□□□ 0.59
DDX56-201ENST00000258772 GNAI3P08754 354 aa18.71■□□□□ 0.58
DDX56-201ENST00000258772 FKBP5Q13451 457 aaPredicted RBP18.71■□□□□ 0.58
DDX56-201ENST00000258772 DDX49Q9Y6V7 483 aaKnown RBP18.71■□□□□ 0.58
DDX56-201ENST00000258772 SALL3Q9BXA9 1300 aa18.7■□□□□ 0.58
DDX56-201ENST00000258772 SLIT1O75093 1534 aa18.7■□□□□ 0.58
DDX56-201ENST00000258772 ARHGAP23Q9P227 1491 aa18.7■□□□□ 0.58
DDX56-201ENST00000258772 ATP8B2P98198 1209 aa18.69■□□□□ 0.58
DDX56-201ENST00000258772 LRRCC1Q9C099 1032 aa18.69■□□□□ 0.58
DDX56-201ENST00000258772 LRRC37A3O60309 1634 aa18.69■□□□□ 0.58
DDX56-201ENST00000258772 CLCN1P35523 988 aa18.69■□□□□ 0.58
DDX56-201ENST00000258772 PNMA6EA0A0J9YXQ4 647 aa18.68■□□□□ 0.58
DDX56-201ENST00000258772 HOXC9P31274 260 aa18.68■□□□□ 0.58
DDX56-201ENST00000258772 PKP1Q13835 747 aa18.68■□□□□ 0.58
DDX56-201ENST00000258772 MCTP1Q6DN14 999 aa18.68■□□□□ 0.58
DDX56-201ENST00000258772 ZGPATQ8N5A5 531 aaKnown RBP18.68■□□□□ 0.58
DDX56-201ENST00000258772 IL17REQ8NFR9 667 aa18.68■□□□□ 0.58
DDX56-201ENST00000258772 NECTIN2Q92692 538 aa18.68■□□□□ 0.58
DDX56-201ENST00000258772 XRN1Q8IZH2 1706 aaKnown RBP18.68■□□□□ 0.58
DDX56-201ENST00000258772 FAM208AQ9UK61 1670 aaKnown RBP18.68■□□□□ 0.58
DDX56-201ENST00000258772 PLPPR3Q6T4P5 718 aa18.67■□□□□ 0.58
DDX56-201ENST00000258772 IBTKQ9P2D0 1353 aaPredicted RBP18.67■□□□□ 0.58
DDX56-201ENST00000258772 SOS1Q07889 1333 aaPredicted RBP18.67■□□□□ 0.58
DDX56-201ENST00000258772 TSHZ3Q63HK5 1081 aa18.67■□□□□ 0.58
DDX56-201ENST00000258772 TUBGCP6Q96RT7 1819 aa18.67■□□□□ 0.58
DDX56-201ENST00000258772 MX1P20591 662 aa18.66■□□□□ 0.58
DDX56-201ENST00000258772 TAF7Q15545 349 aaPredicted RBP18.66■□□□□ 0.58
DDX56-201ENST00000258772 NUTM2GQ5VZR2 741 aa18.66■□□□□ 0.58
DDX56-201ENST00000258772 LMBRD1Q9NUN5 540 aa18.66■□□□□ 0.58
DDX56-201ENST00000258772 BABAM1Q9NWV8 329 aa18.66■□□□□ 0.58
DDX56-201ENST00000258772 NWD1Q149M9 1564 aa18.65■□□□□ 0.58
DDX56-201ENST00000258772 ESYT1Q9BSJ8 1104 aa18.65■□□□□ 0.58
DDX56-201ENST00000258772 MAP3K5Q99683 1374 aa18.65■□□□□ 0.58
DDX56-201ENST00000258772 ZDHHC9Q9Y397 364 aa18.64■□□□□ 0.57
DDX56-201ENST00000258772 LRRFIP2Q9Y608 721 aaKnown RBP18.64■□□□□ 0.57
DDX56-201ENST00000258772 MARF1Q9Y4F3 1742 aaKnown RBP18.64■□□□□ 0.57
DDX56-201ENST00000258772 NEK4P51957 841 aa18.63■□□□□ 0.57
DDX56-201ENST00000258772 THEMISQ8N1K5 641 aaPredicted RBP18.63■□□□□ 0.57
DDX56-201ENST00000258772 USP44Q9H0E7 712 aa18.63■□□□□ 0.57
DDX56-201ENST00000258772 STAP2Q9UGK3 403 aa18.63■□□□□ 0.57
DDX56-201ENST00000258772 ANKARQ7Z5J8 1434 aa18.63■□□□□ 0.57
DDX56-201ENST00000258772 ESPNB1AK53 854 aa18.62■□□□□ 0.57
DDX56-201ENST00000258772 CHMLP26374 656 aa18.62■□□□□ 0.57
DDX56-201ENST00000258772 ABTB2Q8N961 1025 aa18.62■□□□□ 0.57
DDX56-201ENST00000258772 LTV1Q96GA3 475 aaPredicted RBP18.62■□□□□ 0.57
DDX56-201ENST00000258772 SRCIN1Q9C0H9 1055 aa18.62■□□□□ 0.57
DDX56-201ENST00000258772 N4BP2Q86UW6 1770 aaPredicted RBP18.62■□□□□ 0.57
DDX56-201ENST00000258772 TRIM44Q96DX7 344 aaPredicted RBP18.62■□□□□ 0.57
DDX56-201ENST00000258772 TRIM6-TRIM34B2RNG4 842 aa18.61■□□□□ 0.57
DDX56-201ENST00000258772 RILPL2Q969X0 211 aa18.61■□□□□ 0.57
DDX56-201ENST00000258772 NASPP49321 788 aaPredicted RBP18.61■□□□□ 0.57
DDX56-201ENST00000258772 ZNF445P59923 1031 aa18.61■□□□□ 0.57
DDX56-201ENST00000258772 TMX3Q96JJ7 454 aa18.61■□□□□ 0.57
DDX56-201ENST00000258772 PXDNLA1KZ92 1463 aa18.61■□□□□ 0.57
DDX56-201ENST00000258772 UBTFL1P0CB47 393 aaPredicted RBP18.6■□□□□ 0.57
DDX56-201ENST00000258772 KCNA6P17658 529 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 NCLP19338 710 aaKnown RBP18.6■□□□□ 0.57
DDX56-201ENST00000258772 MCCP23508 829 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 MCM2P49736 904 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 CAVIN1Q6NZI2 390 aaKnown RBP18.6■□□□□ 0.57
DDX56-201ENST00000258772 USP54Q70EL1 1684 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 ERBB4Q15303 1308 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 ANAPC15P60006 121 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 HDGFL1Q5TGJ6 251 aa18.6■□□□□ 0.57
DDX56-201ENST00000258772 PRPF40AO75400 957 aaKnown RBP18.59■□□□□ 0.57
DDX56-201ENST00000258772 SSH3Q8TE77 659 aa18.59■□□□□ 0.57
DDX56-201ENST00000258772 PHAXQ9H814 394 aaKnown RBP18.59■□□□□ 0.57
DDX56-201ENST00000258772 CCDC173Q0VFZ6 552 aa18.58■□□□□ 0.57
DDX56-201ENST00000258772 ANO2Q9NQ90 1003 aa18.58■□□□□ 0.57
DDX56-201ENST00000258772 PALD1Q9ULE6 856 aa18.58■□□□□ 0.57
DDX56-201ENST00000258772 ZSCAN23Q3MJ62 389 aa18.58■□□□□ 0.56
DDX56-201ENST00000258772 UNC5CLQ8IV45 518 aa18.58■□□□□ 0.56
DDX56-201ENST00000258772 PPP1R9BQ96SB3 815 aa18.58■□□□□ 0.56
DDX56-201ENST00000258772 AOX1Q06278 1338 aa18.57■□□□□ 0.56
DDX56-201ENST00000258772 USHBP1Q8N6Y0 703 aa18.57■□□□□ 0.56
DDX56-201ENST00000258772 CUL4AQ13619 759 aa18.57■□□□□ 0.56
DDX56-201ENST00000258772 IL17RAQ96F46 866 aa18.57■□□□□ 0.56
DDX56-201ENST00000258772 GPT2Q8TD30 523 aa18.56■□□□□ 0.56
DDX56-201ENST00000258772 IL1RAPL2Q9NP60 686 aa18.56■□□□□ 0.56
DDX56-201ENST00000258772 PPP1R42Q7Z4L9 355 aa18.56■□□□□ 0.56
DDX56-201ENST00000258772 CEMIPQ8WUJ3 1361 aa18.56■□□□□ 0.56
DDX56-201ENST00000258772 SETD1BQ9UPS6 1966 aaKnown RBP18.55■□□□□ 0.56
DDX56-201ENST00000258772 RAB11FIP3O75154 756 aa18.55■□□□□ 0.56
DDX56-201ENST00000258772 ANP32BQ92688 251 aaKnown RBP18.55■□□□□ 0.56
DDX56-201ENST00000258772 POLA2Q14181 598 aa18.55■□□□□ 0.56
DDX56-201ENST00000258772 C14orf37Q86TY3 774 aa18.55■□□□□ 0.56
DDX56-201ENST00000258772 SURF6O75683 361 aaKnown RBP18.54■□□□□ 0.56
DDX56-201ENST00000258772 INTS4Q96HW7 963 aaKnown RBP18.54■□□□□ 0.56
DDX56-201ENST00000258772 CHAMP1Q96JM3 812 aa18.54■□□□□ 0.56
DDX56-201ENST00000258772 EPB41L2O43491 1005 aaKnown RBP18.54■□□□□ 0.56
DDX56-201ENST00000258772 EIF2S2P20042 333 aaKnown RBP18.54■□□□□ 0.56
DDX56-201ENST00000258772 EIF4A1P60842 406 aaKnown RBP18.54■□□□□ 0.56
DDX56-201ENST00000258772 NUTM1Q86Y26 1132 aa18.54■□□□□ 0.56
DDX56-201ENST00000258772 IP6K1Q92551 441 aa18.54■□□□□ 0.56
DDX56-201ENST00000258772 LTN1O94822 1766 aa18.53■□□□□ 0.56
DDX56-201ENST00000258772 BRD1O95696 1058 aa18.53■□□□□ 0.56
DDX56-201ENST00000258772 FOXD4L5Q5VV16 416 aaPredicted RBP18.52■□□□□ 0.56
DDX56-201ENST00000258772 RHPN1Q8TCX5 695 aa18.52■□□□□ 0.56
DDX56-201ENST00000258772 FOXD4L4Q8WXT5 416 aaPredicted RBP18.52■□□□□ 0.56
DDX56-201ENST00000258772 IL25Q9H293 177 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms