RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KCNA6P17658 529 aa26.14■■□□□ 1.78
TRIM28-201ENST00000253024 KCNQ3O43525 872 aa26.14■■□□□ 1.77
TRIM28-201ENST00000253024 IL25Q9H293 177 aa26.14■■□□□ 1.77
TRIM28-201ENST00000253024 ST18O60284 1047 aa26.13■■□□□ 1.77
TRIM28-201ENST00000253024 OVOS2A0A0J9YW53 1432 aa26.13■■□□□ 1.77
TRIM28-201ENST00000253024 OVOS2Q6IE36 1432 aa26.13■■□□□ 1.77
TRIM28-201ENST00000253024 LRRCC1Q9C099 1032 aa26.13■■□□□ 1.77
TRIM28-201ENST00000253024 GDPD2Q9HCC8 539 aa26.13■■□□□ 1.77
TRIM28-201ENST00000253024 GNAT3A8MTJ3 354 aa26.12■■□□□ 1.77
TRIM28-201ENST00000253024 HAP1P54257 671 aaPredicted RBP26.12■■□□□ 1.77
TRIM28-201ENST00000253024 HDGFL1Q5TGJ6 251 aa26.12■■□□□ 1.77
TRIM28-201ENST00000253024 DDX54Q8TDD1 881 aaKnown RBP26.12■■□□□ 1.77
TRIM28-201ENST00000253024 LGR6Q9HBX8 967 aa26.11■■□□□ 1.77
TRIM28-201ENST00000253024 NSFL1CQ9UNZ2 370 aaKnown RBP26.11■■□□□ 1.77
TRIM28-201ENST00000253024 CEP170BQ9Y4F5 1589 aaPredicted RBP26.11■■□□□ 1.77
TRIM28-201ENST00000253024 REC8O95072 547 aa26.11■■□□□ 1.77
TRIM28-201ENST00000253024 CCT4P50991 539 aaKnown RBP26.11■■□□□ 1.77
TRIM28-201ENST00000253024 LRRC59Q96AG4 307 aaKnown RBP26.11■■□□□ 1.77
TRIM28-201ENST00000253024 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.11■■□□□ 1.77
TRIM28-201ENST00000253024 MX1P20591 662 aa26.1■■□□□ 1.77
TRIM28-201ENST00000253024 PEAK1Q9H792 1746 aa26.1■■□□□ 1.77
TRIM28-201ENST00000253024 SURF6O75683 361 aaKnown RBP26.1■■□□□ 1.77
TRIM28-201ENST00000253024 HOXC9P31274 260 aa26.09■■□□□ 1.77
TRIM28-201ENST00000253024 CCDC30Q5VVM6 783 aa26.09■■□□□ 1.77
TRIM28-201ENST00000253024 MPNDQ8N594 471 aa26.09■■□□□ 1.77
TRIM28-201ENST00000253024 FLT4P35916 1363 aa26.09■■□□□ 1.77
TRIM28-201ENST00000253024 NASPP49321 788 aaPredicted RBP26.08■■□□□ 1.77
TRIM28-201ENST00000253024 RNF214Q8ND24 703 aa26.08■■□□□ 1.77
TRIM28-201ENST00000253024 ZDHHC9Q9Y397 364 aa26.08■■□□□ 1.77
TRIM28-201ENST00000253024 KIAA0232Q92628 1395 aa26.07■■□□□ 1.76
TRIM28-201ENST00000253024 UBTFL1P0CB47 393 aaPredicted RBP26.07■■□□□ 1.76
TRIM28-201ENST00000253024 C3P01024 1663 aa26.07■■□□□ 1.76
TRIM28-201ENST00000253024 MPRIPQ6WCQ1 1025 aa26.06■■□□□ 1.76
TRIM28-201ENST00000253024 TMX3Q96JJ7 454 aa26.06■■□□□ 1.76
TRIM28-201ENST00000253024 ITSN1Q15811 1721 aa26.06■■□□□ 1.76
TRIM28-201ENST00000253024 NBPF7P0C2Y1 421 aaPredicted RBP26.06■■□□□ 1.76
TRIM28-201ENST00000253024 USP44Q9H0E7 712 aa26.06■■□□□ 1.76
TRIM28-201ENST00000253024 ESPNB1AK53 854 aa26.05■■□□□ 1.76
TRIM28-201ENST00000253024 AGLP35573 1532 aa26.05■■□□□ 1.76
TRIM28-201ENST00000253024 CPA1P15085 419 aa26.04■■□□□ 1.76
TRIM28-201ENST00000253024 MON2Q7Z3U7 1717 aa26.04■■□□□ 1.76
TRIM28-201ENST00000253024 PPP1R42Q7Z4L9 355 aa26.04■■□□□ 1.76
TRIM28-201ENST00000253024 ESYT1Q9BSJ8 1104 aa26.04■■□□□ 1.76
TRIM28-201ENST00000253024 SKOR2Q2VWA4 1001 aaPredicted RBP26.04■■□□□ 1.76
TRIM28-201ENST00000253024 CHPF2Q9P2E5 772 aa26.04■■□□□ 1.76
TRIM28-201ENST00000253024 SRGAP3O43295 1099 aa26.03■■□□□ 1.76
TRIM28-201ENST00000253024 SIRT1Q96EB6 747 aa26.03■■□□□ 1.76
TRIM28-201ENST00000253024 LMBRD1Q9NUN5 540 aa26.03■■□□□ 1.76
TRIM28-201ENST00000253024 OS9Q13438 667 aaPredicted RBP26.03■■□□□ 1.76
TRIM28-201ENST00000253024 IGSF1Q8N6C5 1336 aa26.03■■□□□ 1.76
TRIM28-201ENST00000253024 SBNO1A3KN83 1393 aa26.03■■□□□ 1.76
TRIM28-201ENST00000253024 TAF7Q15545 349 aaPredicted RBP26.02■■□□□ 1.76
TRIM28-201ENST00000253024 ZSCAN23Q3MJ62 389 aa26.02■■□□□ 1.76
TRIM28-201ENST00000253024 GPT2Q8TD30 523 aa26.02■■□□□ 1.76
TRIM28-201ENST00000253024 TECPR2O15040 1411 aa26.02■■□□□ 1.76
TRIM28-201ENST00000253024 SYCE3A1L190 88 aa26.01■■□□□ 1.76
TRIM28-201ENST00000253024 PRAMEF22A3QJZ6 481 aa26.01■■□□□ 1.76
TRIM28-201ENST00000253024 PRIM1P49642 420 aaKnown RBP26.01■■□□□ 1.76
TRIM28-201ENST00000253024 PI4KAP2A4QPH2 592 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 NUCB2P80303 420 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 PI4KAP1Q8N8J0 262 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 CHMLP26374 656 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 KLHL40Q2TBA0 621 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 NBPF6Q5VWK0 638 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 NBPF4Q96M43 638 aa26.01■■□□□ 1.75
TRIM28-201ENST00000253024 GNAI3P08754 354 aa26■■□□□ 1.75
TRIM28-201ENST00000253024 ATP8B2P98198 1209 aa26■■□□□ 1.75
TRIM28-201ENST00000253024 SPG7Q9UQ90 795 aa26■■□□□ 1.75
TRIM28-201ENST00000253024 ESCO1Q5FWF5 840 aa25.99■■□□□ 1.75
TRIM28-201ENST00000253024 ARHGEF10O15013 1369 aa25.99■■□□□ 1.75
TRIM28-201ENST00000253024 AIMP1Q12904 312 aaKnown RBP25.98■■□□□ 1.75
TRIM28-201ENST00000253024 RBSNQ9H1K0 784 aa25.98■■□□□ 1.75
TRIM28-201ENST00000253024 CWC27Q6UX04 472 aaKnown RBP25.98■■□□□ 1.75
TRIM28-201ENST00000253024 KIF24Q5T7B8 1368 aa25.98■■□□□ 1.75
TRIM28-201ENST00000253024 USP31Q70CQ4 1352 aa25.98■■□□□ 1.75
TRIM28-201ENST00000253024 PA2G4Q9UQ80 394 aaKnown RBP25.97■■□□□ 1.75
TRIM28-201ENST00000253024 SOS1Q07889 1333 aaPredicted RBP25.96■■□□□ 1.75
TRIM28-201ENST00000253024 RGPD8O14715 1765 aaPredicted RBP25.96■■□□□ 1.75
TRIM28-201ENST00000253024 PLEKHG1Q9ULL1 1385 aa25.96■■□□□ 1.75
TRIM28-201ENST00000253024 AKAP12Q02952 1782 aa25.96■■□□□ 1.75
TRIM28-201ENST00000253024 TTC21AQ8NDW8 1320 aa25.96■■□□□ 1.75
TRIM28-201ENST00000253024 ANP32BQ92688 251 aaKnown RBP25.95■■□□□ 1.75
TRIM28-201ENST00000253024 TMEM63CQ9P1W3 806 aa25.95■■□□□ 1.75
TRIM28-201ENST00000253024 JARID2Q92833 1246 aaPredicted RBP25.95■■□□□ 1.74
TRIM28-201ENST00000253024 SRCIN1Q9C0H9 1055 aa25.95■■□□□ 1.74
TRIM28-201ENST00000253024 PIP4K2AP48426 406 aaPredicted RBP25.94■■□□□ 1.74
TRIM28-201ENST00000253024 PSME1Q06323 249 aa25.94■■□□□ 1.74
TRIM28-201ENST00000253024 CLCN1P35523 988 aa25.94■■□□□ 1.74
TRIM28-201ENST00000253024 CYP2E1P05181 493 aaPredicted RBP25.93■■□□□ 1.74
TRIM28-201ENST00000253024 TEFQ10587 303 aa25.93■■□□□ 1.74
TRIM28-201ENST00000253024 PROSER3Q2NL68 480 aa25.93■■□□□ 1.74
TRIM28-201ENST00000253024 CWF19L2Q2TBE0 894 aaKnown RBP25.93■■□□□ 1.74
TRIM28-201ENST00000253024 MAP3K5Q99683 1374 aa25.93■■□□□ 1.74
TRIM28-201ENST00000253024 ZNF530Q6P9A1 599 aaPredicted RBP25.92■■□□□ 1.74
TRIM28-201ENST00000253024 MCCP23508 829 aa25.92■■□□□ 1.74
TRIM28-201ENST00000253024 CCDC9Q9Y3X0 531 aaKnown RBP25.92■■□□□ 1.74
TRIM28-201ENST00000253024 RHPN1Q8TCX5 695 aa25.91■■□□□ 1.74
TRIM28-201ENST00000253024 IBTKQ9P2D0 1353 aaPredicted RBP25.91■■□□□ 1.74
TRIM28-201ENST00000253024 GADD45BO75293 160 aaPredicted RBP25.9■■□□□ 1.74
TRIM28-201ENST00000253024 SIL1Q9H173 461 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms