RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 NCAPD2Q15021 1401 aa15.09■□□□□ 0.01
SF3B6-201ENST00000233468 QSER1Q2KHR3 1735 aa15.09■□□□□ 0.01
SF3B6-201ENST00000233468 PRIM1P49642 420 aaKnown RBP15.09■□□□□ 0.01
SF3B6-201ENST00000233468 PLEKHO1Q53GL0 409 aaPredicted RBP15.09■□□□□ 0.01
SF3B6-201ENST00000233468 SULT6B1Q6IMI4 303 aa15.09■□□□□ 0.01
SF3B6-201ENST00000233468 SPDYE1Q8NFV5 336 aaPredicted RBP15.09■□□□□ 0.01
SF3B6-201ENST00000233468 SYTL4Q96C24 671 aaPredicted RBP15.09■□□□□ 0.01
SF3B6-201ENST00000233468 ARXQ96QS3 562 aa15.09■□□□□ 0.01
SF3B6-201ENST00000233468 LY75O60449 1722 aa15.09■□□□□ 0.01
SF3B6-201ENST00000233468 U2SURPO15042 1029 aaKnown RBP15.08■□□□□ 0
SF3B6-201ENST00000233468 CLEC11AQ9Y240 323 aa15.08■□□□□ 0
SF3B6-201ENST00000233468 MYBBP1AQ9BQG0 1328 aaKnown RBP15.08■□□□□ 0
SF3B6-201ENST00000233468 MEGF6O75095 1541 aa15.07■□□□□ 0
SF3B6-201ENST00000233468 COL24A1Q17RW2 1714 aa15.07■□□□□ 0
SF3B6-201ENST00000233468 ZNF784Q8NCA9 323 aaPredicted RBP15.07■□□□□ 0
SF3B6-201ENST00000233468 MAP2P11137 1827 aaKnown RBP15.07■□□□□ 0
SF3B6-201ENST00000233468 HSP90AB1P08238 724 aaKnown RBP15.06■□□□□ 0
SF3B6-201ENST00000233468 IFNL2Q8IZJ0 200 aa15.06■□□□□ 0
SF3B6-201ENST00000233468 PNPLA7Q6ZV29 1317 aa15.06■□□□□ 0
SF3B6-201ENST00000233468 KDRP35968 1356 aa15.06■□□□□ 0
SF3B6-201ENST00000233468 PRKRIP1Q9H875 184 aaPredicted RBP15.05■□□□□ -0
SF3B6-201ENST00000233468 ANP32CO43423 234 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 NEFMP07197 916 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 C1orf141Q5JVX7 400 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 SLC27A3Q5K4L6 730 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 POTEHQ6S545 545 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 AEBP1Q8IUX7 1158 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 KLHL34Q8N239 644 aa15.04■□□□□ -0
SF3B6-201ENST00000233468 PNNQ9H307 717 aaKnown RBP15.04■□□□□ -0
SF3B6-201ENST00000233468 HMOX1P09601 288 aa15.03■□□□□ -0
SF3B6-201ENST00000233468 U2AF1L5P0DN76 240 aaPredicted RBP15.03■□□□□ -0
SF3B6-201ENST00000233468 U2AF1Q01081 240 aaKnown RBP eCLIP15.03■□□□□ -0
SF3B6-201ENST00000233468 TFCP2L1Q9NZI6 479 aa15.03■□□□□ -0
SF3B6-201ENST00000233468 FCHSD2O94868 740 aa15.02■□□□□ -0
SF3B6-201ENST00000233468 NKX1-1Q15270 411 aaPredicted RBP15.02■□□□□ -0
SF3B6-201ENST00000233468 MAP3K5Q99683 1374 aa15.01□□□□□ -0.01
SF3B6-201ENST00000233468 CYP27B1O15528 508 aa15.01□□□□□ -0.01
SF3B6-201ENST00000233468 PHKG2P15735 406 aa15.01□□□□□ -0.01
SF3B6-201ENST00000233468 HMGB2P26583 209 aaKnown RBP15.01□□□□□ -0.01
SF3B6-201ENST00000233468 ZNF530Q6P9A1 599 aaPredicted RBP15.01□□□□□ -0.01
SF3B6-201ENST00000233468 NLGN2Q8NFZ4 835 aa15.01□□□□□ -0.01
SF3B6-201ENST00000233468 TAF1LQ8IZX4 1826 aa15.01□□□□□ -0.01
SF3B6-201ENST00000233468 COL3A1P02461 1466 aaPredicted RBP15.01□□□□□ -0.01
SF3B6-201ENST00000233468 GPR162Q16538 588 aa15□□□□□ -0.01
SF3B6-201ENST00000233468 GAS2L2Q8NHY3 880 aa15□□□□□ -0.01
SF3B6-201ENST00000233468 SLC16A10Q8TF71 515 aa15□□□□□ -0.01
SF3B6-201ENST00000233468 CCNL1Q9UK58 526 aaPredicted RBP15□□□□□ -0.01
SF3B6-201ENST00000233468 ITGB4P16144 1822 aa15□□□□□ -0.01
SF3B6-201ENST00000233468 AKAP4Q5JQC9 854 aa14.99□□□□□ -0.01
SF3B6-201ENST00000233468 COL23A1Q86Y22 540 aaPredicted RBP14.99□□□□□ -0.01
SF3B6-201ENST00000233468 PELP1Q8IZL8 1130 aaKnown RBP14.99□□□□□ -0.01
SF3B6-201ENST00000233468 DCAF5Q96JK2 942 aa14.99□□□□□ -0.01
SF3B6-201ENST00000233468 C5P01031 1676 aa14.99□□□□□ -0.01
SF3B6-201ENST00000233468 TOGARAM1Q9Y4F4 1720 aa14.98□□□□□ -0.01
SF3B6-201ENST00000233468 POLD1P28340 1107 aa14.98□□□□□ -0.01
SF3B6-201ENST00000233468 ERVV-2B6SEH9 535 aa14.97□□□□□ -0.01
SF3B6-201ENST00000233468 PRKAR2BP31323 418 aa14.97□□□□□ -0.01
SF3B6-201ENST00000233468 WDR43Q15061 677 aaKnown RBP eCLIP14.97□□□□□ -0.01
SF3B6-201ENST00000233468 MSL1Q68DK7 614 aa14.97□□□□□ -0.01
SF3B6-201ENST00000233468 RSPH6AQ9H0K4 717 aa14.97□□□□□ -0.01
SF3B6-201ENST00000233468 SMIM5Q71RC9 77 aa14.96□□□□□ -0.01
SF3B6-201ENST00000233468 TMOD3Q9NYL9 352 aa14.96□□□□□ -0.01
SF3B6-201ENST00000233468 MTHFSDQ2M296 383 aaKnown RBP14.95□□□□□ -0.02
SF3B6-201ENST00000233468 MPRIPQ6WCQ1 1025 aa14.95□□□□□ -0.02
SF3B6-201ENST00000233468 SMARCC1Q92922 1105 aaPredicted RBP14.95□□□□□ -0.02
SF3B6-201ENST00000233468 MAPK8IP3Q9UPT6 1336 aa14.94□□□□□ -0.02
SF3B6-201ENST00000233468 YBX3P16989 372 aaKnown RBP eCLIP14.94□□□□□ -0.022e-11■■□□□ 13.3
SF3B6-201ENST00000233468 CABP4P57796 275 aa14.94□□□□□ -0.02
SF3B6-201ENST00000233468 AMIGO3Q86WK7 504 aa14.94□□□□□ -0.02
SF3B6-201ENST00000233468 PKD1L3Q7Z443 1732 aa14.93□□□□□ -0.02
SF3B6-201ENST00000233468 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
SF3B6-201ENST00000233468 FKBP8Q14318 412 aa14.93□□□□□ -0.02
SF3B6-201ENST00000233468 PIP4P2Q8N4L2 257 aa14.92□□□□□ -0.02
SF3B6-201ENST00000233468 RTF1Q92541 710 aaKnown RBP14.92□□□□□ -0.02
SF3B6-201ENST00000233468 PALLDQ8WX93 1383 aa14.92□□□□□ -0.02
SF3B6-201ENST00000233468 UBR3Q6ZT12 1888 aa14.92□□□□□ -0.02
SF3B6-201ENST00000233468 C4BP0C0L5 1744 aa14.92□□□□□ -0.02
SF3B6-201ENST00000233468 CEP350Q5VT06 3117 aa14.91□□□□□ -0.02
SF3B6-201ENST00000233468 C1QTNF8P60827 252 aa14.91□□□□□ -0.02
SF3B6-201ENST00000233468 HTATSF1O43719 755 aaKnown RBP14.9□□□□□ -0.02
SF3B6-201ENST00000233468 PIGBQ92521 554 aa14.9□□□□□ -0.02
SF3B6-201ENST00000233468 PHACTR3Q96KR7 559 aa14.9□□□□□ -0.02
SF3B6-201ENST00000233468 SENP3-EIF4A1A0A087X0R7 540 aa14.89□□□□□ -0.03
SF3B6-201ENST00000233468 RNMTO43148 476 aaKnown RBP14.89□□□□□ -0.03
SF3B6-201ENST00000233468 TEFQ10587 303 aa14.88□□□□□ -0.03
SF3B6-201ENST00000233468 PLEKHF1Q96S99 279 aa14.88□□□□□ -0.03
SF3B6-201ENST00000233468 SLC52A2Q9HAB3 445 aa14.88□□□□□ -0.03
SF3B6-201ENST00000233468 MRS2Q9HD23 443 aa14.88□□□□□ -0.03
SF3B6-201ENST00000233468 PHF14O94880 888 aa14.87□□□□□ -0.03
SF3B6-201ENST00000233468 PRR29P0C7W0 189 aa14.87□□□□□ -0.03
SF3B6-201ENST00000233468 LMOD3Q0VAK6 560 aa14.87□□□□□ -0.03
SF3B6-201ENST00000233468 NFATC2IPQ8NCF5 419 aa14.87□□□□□ -0.03
SF3B6-201ENST00000233468 RUNDC1Q96C34 613 aa14.87□□□□□ -0.03
SF3B6-201ENST00000233468 KDM6AO15550 1401 aaPredicted RBP14.86□□□□□ -0.03
SF3B6-201ENST00000233468 FXR2P51116 673 aaKnown RBP eCLIP14.86□□□□□ -0.03
SF3B6-201ENST00000233468 NFE2L2Q16236 605 aa14.86□□□□□ -0.03
SF3B6-201ENST00000233468 LGR6Q9HBX8 967 aa14.86□□□□□ -0.03
SF3B6-201ENST00000233468 WWC3Q9ULE0 1092 aa14.86□□□□□ -0.03
SF3B6-201ENST00000233468 ADAMTS8Q9UP79 889 aa14.86□□□□□ -0.03
SF3B6-201ENST00000233468 LINC00116Q8NCU8 138 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms