Protein–RNA interactions for Protein: Q5R1H9

Trav7d-4, T cell receptor alpha variable 7D-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-4Q5R1H9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Trav7d-4Q5R1H9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
Trav7d-4Q5R1H9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trav7d-4Q5R1H9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Trav7d-4Q5R1H9 Psd-208ENSMUST00000224556 2034 ntBASIC24.95■■□□□ 1.58
Trav7d-4Q5R1H9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav7d-4Q5R1H9 Gm25239-201ENSMUST00000174915 86 ntBASIC24.34■■□□□ 1.49
Trav7d-4Q5R1H9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Trav7d-4Q5R1H9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trav7d-4Q5R1H9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trav7d-4Q5R1H9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Trav7d-4Q5R1H9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Trav7d-4Q5R1H9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
Trav7d-4Q5R1H9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav7d-4Q5R1H9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trav7d-4Q5R1H9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Trav7d-4Q5R1H9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Trav7d-4Q5R1H9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Trav7d-4Q5R1H9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22.96■■□□□ 1.27
Trav7d-4Q5R1H9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav7d-4Q5R1H9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Trav7d-4Q5R1H9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
Trav7d-4Q5R1H9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav7d-4Q5R1H9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav7d-4Q5R1H9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.6■■□□□ 1.21
Trav7d-4Q5R1H9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav7d-4Q5R1H9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Trav7d-4Q5R1H9 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.57■■□□□ 1.2
Trav7d-4Q5R1H9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav7d-4Q5R1H9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.51■■□□□ 1.19
Trav7d-4Q5R1H9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav7d-4Q5R1H9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav7d-4Q5R1H9 Gm15042-201ENSMUST00000120212 883 ntBASIC22.31■■□□□ 1.16
Trav7d-4Q5R1H9 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.27■■□□□ 1.16
Trav7d-4Q5R1H9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trav7d-4Q5R1H9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav7d-4Q5R1H9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trav7d-4Q5R1H9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Trav7d-4Q5R1H9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.2■■□□□ 1.14
Trav7d-4Q5R1H9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Trav7d-4Q5R1H9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
Trav7d-4Q5R1H9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.14■■□□□ 1.14
Trav7d-4Q5R1H9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Trav7d-4Q5R1H9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav7d-4Q5R1H9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Trav7d-4Q5R1H9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav7d-4Q5R1H9 Gm15045-201ENSMUST00000117359 883 ntBASIC21.98■■□□□ 1.11
Trav7d-4Q5R1H9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav7d-4Q5R1H9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav7d-4Q5R1H9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav7d-4Q5R1H9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21.84■■□□□ 1.09
Trav7d-4Q5R1H9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trav7d-4Q5R1H9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trav7d-4Q5R1H9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav7d-4Q5R1H9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Trav7d-4Q5R1H9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Trav7d-4Q5R1H9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Trav7d-4Q5R1H9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trav7d-4Q5R1H9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav7d-4Q5R1H9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav7d-4Q5R1H9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
Trav7d-4Q5R1H9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav7d-4Q5R1H9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav7d-4Q5R1H9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav7d-4Q5R1H9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav7d-4Q5R1H9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav7d-4Q5R1H9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav7d-4Q5R1H9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.43■■□□□ 1.02
Trav7d-4Q5R1H9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trav7d-4Q5R1H9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav7d-4Q5R1H9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Trav7d-4Q5R1H9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
Trav7d-4Q5R1H9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.37■■□□□ 1.01
Trav7d-4Q5R1H9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Trav7d-4Q5R1H9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Trav7d-4Q5R1H9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav7d-4Q5R1H9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav7d-4Q5R1H9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav7d-4Q5R1H9 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav7d-4Q5R1H9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Trav7d-4Q5R1H9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav7d-4Q5R1H9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav7d-4Q5R1H9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.18■□□□□ 0.98
Trav7d-4Q5R1H9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav7d-4Q5R1H9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav7d-4Q5R1H9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav7d-4Q5R1H9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.1■□□□□ 0.97
Trav7d-4Q5R1H9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trav7d-4Q5R1H9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trav7d-4Q5R1H9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trav7d-4Q5R1H9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav7d-4Q5R1H9 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav7d-4Q5R1H9 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav7d-4Q5R1H9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav7d-4Q5R1H9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav7d-4Q5R1H9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trav7d-4Q5R1H9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trav7d-4Q5R1H9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trav7d-4Q5R1H9 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav7d-4Q5R1H9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms