Protein–RNA interactions for Protein: P82350

Sgca, Alpha-sarcoglycan, mousemouse

Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SgcaP82350 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SgcaP82350 Gm25239-201ENSMUST00000174915 86 ntBASIC27.56■■■□□ 2
SgcaP82350 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SgcaP82350 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SgcaP82350 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SgcaP82350 Psd-208ENSMUST00000224556 2034 ntBASIC26.76■■□□□ 1.87
SgcaP82350 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SgcaP82350 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SgcaP82350 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
SgcaP82350 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SgcaP82350 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SgcaP82350 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SgcaP82350 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SgcaP82350 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
SgcaP82350 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.13■■□□□ 1.61
SgcaP82350 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SgcaP82350 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SgcaP82350 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SgcaP82350 Gm15042-201ENSMUST00000120212 883 ntBASIC24.96■■□□□ 1.59
SgcaP82350 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
SgcaP82350 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
SgcaP82350 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SgcaP82350 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SgcaP82350 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
SgcaP82350 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SgcaP82350 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SgcaP82350 Gm15045-201ENSMUST00000117359 883 ntBASIC24.52■■□□□ 1.52
SgcaP82350 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
SgcaP82350 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.38■■□□□ 1.49
SgcaP82350 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SgcaP82350 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SgcaP82350 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SgcaP82350 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
SgcaP82350 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SgcaP82350 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.26■■□□□ 1.47
SgcaP82350 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.24■■□□□ 1.47
SgcaP82350 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SgcaP82350 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SgcaP82350 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC24.17■■□□□ 1.46
SgcaP82350 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.11■■□□□ 1.45
SgcaP82350 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
SgcaP82350 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SgcaP82350 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
SgcaP82350 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.03■■□□□ 1.44
SgcaP82350 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SgcaP82350 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SgcaP82350 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
SgcaP82350 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SgcaP82350 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SgcaP82350 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.82■■□□□ 1.4
SgcaP82350 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SgcaP82350 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SgcaP82350 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SgcaP82350 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
SgcaP82350 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
SgcaP82350 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SgcaP82350 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SgcaP82350 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SgcaP82350 Gm24109-201ENSMUST00000175489 103 ntBASIC23.45■■□□□ 1.34
SgcaP82350 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.43■■□□□ 1.34
SgcaP82350 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
SgcaP82350 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SgcaP82350 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
SgcaP82350 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SgcaP82350 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.35■■□□□ 1.33
SgcaP82350 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SgcaP82350 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SgcaP82350 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
SgcaP82350 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SgcaP82350 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SgcaP82350 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SgcaP82350 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SgcaP82350 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SgcaP82350 Gm23366-201ENSMUST00000175022 89 ntBASIC23.15■■□□□ 1.3
SgcaP82350 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
SgcaP82350 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SgcaP82350 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SgcaP82350 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SgcaP82350 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SgcaP82350 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SgcaP82350 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.99■■□□□ 1.27
SgcaP82350 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SgcaP82350 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SgcaP82350 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SgcaP82350 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
SgcaP82350 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
SgcaP82350 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
SgcaP82350 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SgcaP82350 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
SgcaP82350 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
SgcaP82350 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
SgcaP82350 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SgcaP82350 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
SgcaP82350 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SgcaP82350 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SgcaP82350 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.74■■□□□ 1.23
SgcaP82350 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SgcaP82350 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
SgcaP82350 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.71■■□□□ 1.23
SgcaP82350 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms