Protein–RNA interactions for Protein: A0A075B621

Trav6n-5, T cell receptor alpha variable 6N-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6n-5A0A075B621 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trav6n-5A0A075B621 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Trav6n-5A0A075B621 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trav6n-5A0A075B621 Psd-208ENSMUST00000224556 2034 ntBASIC25.47■■□□□ 1.67
Trav6n-5A0A075B621 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trav6n-5A0A075B621 Gm25239-201ENSMUST00000174915 86 ntBASIC25.22■■□□□ 1.63
Trav6n-5A0A075B621 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Trav6n-5A0A075B621 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Trav6n-5A0A075B621 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trav6n-5A0A075B621 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trav6n-5A0A075B621 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trav6n-5A0A075B621 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Trav6n-5A0A075B621 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trav6n-5A0A075B621 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Trav6n-5A0A075B621 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Trav6n-5A0A075B621 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Trav6n-5A0A075B621 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Trav6n-5A0A075B621 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Trav6n-5A0A075B621 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.62■■□□□ 1.37
Trav6n-5A0A075B621 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trav6n-5A0A075B621 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trav6n-5A0A075B621 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Trav6n-5A0A075B621 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav6n-5A0A075B621 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.15■■□□□ 1.3
Trav6n-5A0A075B621 Gm15042-201ENSMUST00000120212 883 ntBASIC23.08■■□□□ 1.29
Trav6n-5A0A075B621 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trav6n-5A0A075B621 Gm42596-201ENSMUST00000196305 1958 ntBASIC23■■□□□ 1.27
Trav6n-5A0A075B621 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Trav6n-5A0A075B621 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Trav6n-5A0A075B621 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.88■■□□□ 1.25
Trav6n-5A0A075B621 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.86■■□□□ 1.25
Trav6n-5A0A075B621 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.86■■□□□ 1.25
Trav6n-5A0A075B621 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.84■■□□□ 1.25
Trav6n-5A0A075B621 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav6n-5A0A075B621 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav6n-5A0A075B621 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trav6n-5A0A075B621 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Trav6n-5A0A075B621 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trav6n-5A0A075B621 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Trav6n-5A0A075B621 Gm15045-201ENSMUST00000117359 883 ntBASIC22.72■■□□□ 1.23
Trav6n-5A0A075B621 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Trav6n-5A0A075B621 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav6n-5A0A075B621 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trav6n-5A0A075B621 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Trav6n-5A0A075B621 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Trav6n-5A0A075B621 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Trav6n-5A0A075B621 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Trav6n-5A0A075B621 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trav6n-5A0A075B621 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.52■■□□□ 1.2
Trav6n-5A0A075B621 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trav6n-5A0A075B621 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Trav6n-5A0A075B621 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav6n-5A0A075B621 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trav6n-5A0A075B621 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trav6n-5A0A075B621 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trav6n-5A0A075B621 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Trav6n-5A0A075B621 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Trav6n-5A0A075B621 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Trav6n-5A0A075B621 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trav6n-5A0A075B621 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Trav6n-5A0A075B621 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Trav6n-5A0A075B621 CT025624.2-201ENSMUST00000223609 1909 ntBASIC22.01■■□□□ 1.11
Trav6n-5A0A075B621 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav6n-5A0A075B621 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav6n-5A0A075B621 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav6n-5A0A075B621 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav6n-5A0A075B621 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trav6n-5A0A075B621 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Trav6n-5A0A075B621 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav6n-5A0A075B621 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav6n-5A0A075B621 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trav6n-5A0A075B621 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Trav6n-5A0A075B621 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.81■■□□□ 1.08
Trav6n-5A0A075B621 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav6n-5A0A075B621 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav6n-5A0A075B621 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav6n-5A0A075B621 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav6n-5A0A075B621 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6n-5A0A075B621 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trav6n-5A0A075B621 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav6n-5A0A075B621 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Trav6n-5A0A075B621 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav6n-5A0A075B621 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav6n-5A0A075B621 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav6n-5A0A075B621 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trav6n-5A0A075B621 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
Trav6n-5A0A075B621 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Trav6n-5A0A075B621 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav6n-5A0A075B621 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav6n-5A0A075B621 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6n-5A0A075B621 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.41■■□□□ 1.02
Trav6n-5A0A075B621 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav6n-5A0A075B621 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6n-5A0A075B621 Gm24109-201ENSMUST00000175489 103 ntBASIC21.38■■□□□ 1.01
Trav6n-5A0A075B621 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Trav6n-5A0A075B621 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Trav6n-5A0A075B621 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav6n-5A0A075B621 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6n-5A0A075B621 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.34■■□□□ 1.01
Trav6n-5A0A075B621 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms