Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LSM1O15116 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
LSM1O15116 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LSM1O15116 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.14■□□□□ 0.5
LSM1O15116 AC073592.3-201ENST00000625118 1834 ntBASIC18.14■□□□□ 0.5
LSM1O15116 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LSM1O15116 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
LSM1O15116 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.14■□□□□ 0.49
LSM1O15116 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.14■□□□□ 0.49
LSM1O15116 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.14■□□□□ 0.49
LSM1O15116 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.14■□□□□ 0.49
LSM1O15116 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.14■□□□□ 0.49
LSM1O15116 AC124016.1-201ENST00000609552 612 ntBASIC18.14■□□□□ 0.49
LSM1O15116 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
LSM1O15116 AC126763.1-201ENST00000552015 2118 ntBASIC18.14■□□□□ 0.49
LSM1O15116 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.14■□□□□ 0.49
LSM1O15116 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LSM1O15116 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LSM1O15116 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 KRT8P11-201ENST00000409686 1436 ntBASIC18.14■□□□□ 0.49
LSM1O15116 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LSM1O15116 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LSM1O15116 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.14■□□□□ 0.49
LSM1O15116 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LSM1O15116 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
LSM1O15116 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.13■□□□□ 0.49
LSM1O15116 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.13■□□□□ 0.49
LSM1O15116 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
LSM1O15116 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.13■□□□□ 0.49
LSM1O15116 AL445675.2-201ENST00000620291 557 ntBASIC18.13■□□□□ 0.49
LSM1O15116 AL133373.2-201ENST00000623187 2828 ntBASIC18.13■□□□□ 0.49
LSM1O15116 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
LSM1O15116 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM1O15116 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM1O15116 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM1O15116 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
LSM1O15116 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.13■□□□□ 0.49
LSM1O15116 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LSM1O15116 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.13■□□□□ 0.49
LSM1O15116 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.13■□□□□ 0.49
LSM1O15116 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM1O15116 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM1O15116 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LSM1O15116 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 AC133681.1-201ENST00000465482 601 ntBASIC18.12■□□□□ 0.49
LSM1O15116 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.12■□□□□ 0.49
LSM1O15116 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.12■□□□□ 0.49
LSM1O15116 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 MTMR9LP-203ENST00000426597 1545 ntBASIC18.12■□□□□ 0.49
LSM1O15116 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 149.8 ms