Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL603908.1-201ENST00000406098 201 ntBASIC-2.08□□□□□ -2.74
FOXA1P55317 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.08□□□□□ -2.74
FOXA1P55317 RNU6-361P-201ENST00000364454 107 ntBASIC-2.09□□□□□ -2.74
FOXA1P55317 SNORD54-201ENST00000459159 67 ntBASIC-2.09□□□□□ -2.74
FOXA1P55317 SNORA40.16-201ENST00000517238 121 ntBASIC-2.1□□□□□ -2.75
FOXA1P55317 SNORA25.4-201ENST00000363666 124 ntBASIC-2.11□□□□□ -2.75
FOXA1P55317 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.11□□□□□ -2.75
FOXA1P55317 RNU6-820P-201ENST00000384273 107 ntBASIC-2.11□□□□□ -2.75
FOXA1P55317 RNU6-530P-201ENST00000391180 107 ntBASIC-2.11□□□□□ -2.75
FOXA1P55317 MIR466-201ENST00000580653 84 ntBASIC-2.11□□□□□ -2.75
FOXA1P55317 RNU7-119P-201ENST00000459279 63 ntBASIC-2.12□□□□□ -2.75
FOXA1P55317 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.12□□□□□ -2.75
FOXA1P55317 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.13□□□□□ -2.75
FOXA1P55317 MIR4748-201ENST00000578076 82 ntBASIC-2.13□□□□□ -2.75
FOXA1P55317 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.14□□□□□ -2.75
FOXA1P55317 SNORD30.1-201ENST00000391309 70 ntBASIC-2.14□□□□□ -2.75
FOXA1P55317 SNORD45.2-201ENST00000363552 72 ntBASIC-2.15□□□□□ -2.75
FOXA1P55317 RNU6-406P-201ENST00000516470 107 ntBASIC-2.15□□□□□ -2.75
FOXA1P55317 AC062037.1-201ENST00000605302 128 ntBASIC-2.15□□□□□ -2.75
FOXA1P55317 AC097484.2-201ENST00000509147 251 ntBASIC-2.16□□□□□ -2.76
FOXA1P55317 MIR5582-201ENST00000579697 68 ntBASIC-2.16□□□□□ -2.76
FOXA1P55317 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.17□□□□□ -2.76
FOXA1P55317 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.17□□□□□ -2.76
FOXA1P55317 AL451105.1-201ENST00000450005 189 ntBASIC-2.17□□□□□ -2.76
FOXA1P55317 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.18□□□□□ -2.76
FOXA1P55317 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.18□□□□□ -2.76
FOXA1P55317 MIR4426-201ENST00000640330 63 ntBASIC-2.18□□□□□ -2.76
FOXA1P55317 RNU6-940P-201ENST00000363433 104 ntBASIC-2.2□□□□□ -2.76
FOXA1P55317 RNU6-871P-201ENST00000516122 100 ntBASIC-2.2□□□□□ -2.76
FOXA1P55317 MIR4511-201ENST00000582784 87 ntBASIC-2.2□□□□□ -2.76
FOXA1P55317 FTX_4.1-201ENST00000616291 147 ntBASIC-2.2□□□□□ -2.76
FOXA1P55317 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.21□□□□□ -2.76
FOXA1P55317 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.21□□□□□ -2.76
FOXA1P55317 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.21□□□□□ -2.76
FOXA1P55317 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.21□□□□□ -2.76
FOXA1P55317 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.21□□□□□ -2.76
FOXA1P55317 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.21□□□□□ -2.76
FOXA1P55317 MIR379-201ENST00000362218 67 ntBASIC-2.22□□□□□ -2.76
FOXA1P55317 AC103706.3-201ENST00000636297 85 ntBASIC-2.22□□□□□ -2.76
FOXA1P55317 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.23□□□□□ -2.77
FOXA1P55317 RNU6-300P-201ENST00000459080 104 ntBASIC-2.23□□□□□ -2.77
FOXA1P55317 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.23□□□□□ -2.77
FOXA1P55317 MIR3202-2-201ENST00000635980 79 ntBASIC-2.23□□□□□ -2.77
FOXA1P55317 U6.111-201ENST00000636093 83 ntBASIC-2.23□□□□□ -2.77
FOXA1P55317 RNA5SP93-201ENST00000362525 114 ntBASIC-2.24□□□□□ -2.77
FOXA1P55317 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.24□□□□□ -2.77
FOXA1P55317 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.24□□□□□ -2.77
FOXA1P55317 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.24□□□□□ -2.77
FOXA1P55317 MIR3938-201ENST00000582157 103 ntBASIC-2.24□□□□□ -2.77
FOXA1P55317 RNU6-590P-201ENST00000365039 107 ntBASIC-2.25□□□□□ -2.77
FOXA1P55317 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.25□□□□□ -2.77
FOXA1P55317 RNU6-176P-201ENST00000517196 105 ntBASIC-2.25□□□□□ -2.77
FOXA1P55317 RNU6-912P-201ENST00000363800 104 ntBASIC-2.26□□□□□ -2.77
FOXA1P55317 RNU6-68P-201ENST00000516576 104 ntBASIC-2.26□□□□□ -2.77
FOXA1P55317 RNU6-539P-201ENST00000516665 103 ntBASIC-2.26□□□□□ -2.77
FOXA1P55317 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.26□□□□□ -2.77
FOXA1P55317 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.27□□□□□ -2.77
FOXA1P55317 RNU6-419P-201ENST00000517030 63 ntBASIC-2.27□□□□□ -2.77
FOXA1P55317 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.28□□□□□ -2.77
FOXA1P55317 SNORD113-3-201ENST00000364830 72 ntBASIC-2.28□□□□□ -2.77
FOXA1P55317 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.28□□□□□ -2.77
FOXA1P55317 RNU6-857P-201ENST00000515893 110 ntBASIC-2.28□□□□□ -2.77
FOXA1P55317 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.29□□□□□ -2.78
FOXA1P55317 RNY4-201ENST00000516507 96 ntBASIC-2.29□□□□□ -2.78
FOXA1P55317 U2.22-201ENST00000636441 106 ntBASIC-2.29□□□□□ -2.78
FOXA1P55317 MIR4679-1-201ENST00000637619 75 ntBASIC-2.3□□□□□ -2.78
FOXA1P55317 RNY4P9-201ENST00000363194 97 ntBASIC-2.31□□□□□ -2.78
FOXA1P55317 MIR1255A-201ENST00000408338 113 ntBASIC-2.31□□□□□ -2.78
FOXA1P55317 RNU6-279P-201ENST00000391297 101 ntBASIC-2.32□□□□□ -2.78
FOXA1P55317 RNU6-742P-201ENST00000365289 107 ntBASIC-2.33□□□□□ -2.78
FOXA1P55317 RNU6-573P-201ENST00000383938 106 ntBASIC-2.33□□□□□ -2.78
FOXA1P55317 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.33□□□□□ -2.78
FOXA1P55317 SNORD73B-201ENST00000364394 72 ntBASIC-2.34□□□□□ -2.78
FOXA1P55317 RNU6-800P-201ENST00000384473 103 ntBASIC-2.34□□□□□ -2.78
FOXA1P55317 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.35□□□□□ -2.79
FOXA1P55317 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.36□□□□□ -2.79
FOXA1P55317 RNU6-141P-201ENST00000410499 105 ntBASIC-2.37□□□□□ -2.79
FOXA1P55317 AC110620.1-201ENST00000416042 228 ntBASIC-2.37□□□□□ -2.79
FOXA1P55317 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.39□□□□□ -2.79
FOXA1P55317 RNY4P29-201ENST00000410801 97 ntBASIC-2.39□□□□□ -2.79
FOXA1P55317 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.4□□□□□ -2.79
FOXA1P55317 SNORA26.2-201ENST00000390922 122 ntBASIC-2.4□□□□□ -2.79
FOXA1P55317 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.4□□□□□ -2.79
FOXA1P55317 RNA5SP170-201ENST00000517150 101 ntBASIC-2.4□□□□□ -2.79
FOXA1P55317 RNU6-230P-201ENST00000362457 104 ntBASIC-2.41□□□□□ -2.8
FOXA1P55317 Y_RNA.388-201ENST00000383919 113 ntBASIC-2.41□□□□□ -2.8
FOXA1P55317 Y_RNA.565-201ENST00000384719 101 ntBASIC-2.41□□□□□ -2.8
FOXA1P55317 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.42□□□□□ -2.8
FOXA1P55317 MIR1254-1-201ENST00000408257 97 ntBASIC-2.42□□□□□ -2.8
FOXA1P55317 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.42□□□□□ -2.8
FOXA1P55317 RNU6-1298P-201ENST00000362456 101 ntBASIC-2.43□□□□□ -2.8
FOXA1P55317 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.43□□□□□ -2.8
FOXA1P55317 MIR548X-201ENST00000580069 75 ntBASIC-2.44□□□□□ -2.8
FOXA1P55317 SNORD78.1-201ENST00000390866 65 ntBASIC-2.45□□□□□ -2.8
FOXA1P55317 RNA5SP225-201ENST00000410874 135 ntBASIC-2.45□□□□□ -2.8
FOXA1P55317 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.45□□□□□ -2.8
FOXA1P55317 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.47□□□□□ -2.8
FOXA1P55317 RNU6-345P-201ENST00000517001 107 ntBASIC-2.47□□□□□ -2.8
FOXA1P55317 RNU6-776P-201ENST00000364403 104 ntBASIC-2.5□□□□□ -2.81
FOXA1P55317 RNU6-1022P-201ENST00000365049 104 ntBASIC-2.5□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 258 ms