Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-781P-201ENST00000516377 101 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 AL359920.1-201ENST00000618332 176 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 SNORD127-201ENST00000458892 86 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 RNU7-121P-201ENST00000516604 62 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 RNU6-537P-201ENST00000517277 103 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.44□□□□□ -2.8
USF3Q68DE3 RNU6-239P-201ENST00000390990 99 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 MTND4LP1-201ENST00000446263 157 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 MTND3P3-201ENST00000505004 126 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 RNU6-182P-201ENST00000516970 105 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 RNU6-624P-201ENST00000363411 107 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 RNU6-460P-201ENST00000391158 108 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 MIR1236-201ENST00000408340 102 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 MIR4679-2-201ENST00000578358 77 ntBASIC-2.45□□□□□ -2.8
USF3Q68DE3 AL450471.1-201ENST00000447509 127 ntBASIC-2.46□□□□□ -2.8
USF3Q68DE3 RNU6-988P-201ENST00000519081 107 ntBASIC-2.46□□□□□ -2.8
USF3Q68DE3 MIR1254-1-201ENST00000408257 97 ntBASIC-2.46□□□□□ -2.8
USF3Q68DE3 Y_RNA.717-201ENST00000517106 92 ntBASIC-2.46□□□□□ -2.8
USF3Q68DE3 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-2.46□□□□□ -2.8
USF3Q68DE3 RNU6-520P-201ENST00000384717 104 ntBASIC-2.47□□□□□ -2.8
USF3Q68DE3 RNA5SP173-201ENST00000364857 136 ntBASIC-2.48□□□□□ -2.81
USF3Q68DE3 RNU6-639P-201ENST00000384074 107 ntBASIC-2.48□□□□□ -2.81
USF3Q68DE3 SNORD19B-201ENST00000459623 84 ntBASIC-2.48□□□□□ -2.81
USF3Q68DE3 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 RNU6-590P-201ENST00000365039 107 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 SNORD115-45-201ENST00000391078 81 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 RNY4P18-201ENST00000391107 89 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-2.49□□□□□ -2.81
USF3Q68DE3 Y_RNA.705-201ENST00000516862 110 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 Y_RNA.96-201ENST00000363092 109 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-2.49□□□□□ -2.81
USF3Q68DE3 Y_RNA.649-201ENST00000459077 103 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 MIR5009-201ENST00000578736 100 ntBASIC-2.49□□□□□ -2.81
USF3Q68DE3 RNA5SP215-201ENST00000363440 122 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 MIR519C-201ENST00000385053 87 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 Y_RNA.194-201ENST00000363985 102 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 RNU6-737P-201ENST00000365370 107 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 Y_RNA.435-201ENST00000384095 112 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 Y_RNA.455-201ENST00000384230 98 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 SNORD116-4-201ENST00000384733 96 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 RNU6-718P-201ENST00000516166 105 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 RNU6-1061P-201ENST00000516530 99 ntBASIC-2.5□□□□□ -2.81
USF3Q68DE3 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.51□□□□□ -2.81
USF3Q68DE3 RNU6-300P-201ENST00000459080 104 ntBASIC-2.51□□□□□ -2.81
USF3Q68DE3 RNU6-176P-201ENST00000517196 105 ntBASIC-2.51□□□□□ -2.81
USF3Q68DE3 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 Y_RNA.384-201ENST00000383909 102 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 Y_RNA.459-201ENST00000384251 102 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 RNU7-61P-201ENST00000515897 61 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 Y_RNA.318-201ENST00000365131 97 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 RNU6-918P-201ENST00000391219 106 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 RNU6-303P-201ENST00000517091 106 ntBASIC-2.52□□□□□ -2.81
USF3Q68DE3 SNORD37.2-201ENST00000391075 66 ntBASIC-2.53□□□□□ -2.81
USF3Q68DE3 Y_RNA.626-201ENST00000411288 95 ntBASIC-2.53□□□□□ -2.81
USF3Q68DE3 RNU7-160P-201ENST00000516660 62 ntBASIC-2.53□□□□□ -2.81
USF3Q68DE3 RNU4-11P-201ENST00000365287 132 ntBASIC-2.54□□□□□ -2.82
USF3Q68DE3 RNU7-197P-201ENST00000458836 62 ntBASIC-2.54□□□□□ -2.82
USF3Q68DE3 Y_RNA.632-201ENST00000459189 102 ntBASIC-2.54□□□□□ -2.82
USF3Q68DE3 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-2.54□□□□□ -2.82
USF3Q68DE3 RNU7-153P-201ENST00000516455 62 ntBASIC-2.55□□□□□ -2.82
USF3Q68DE3 U7.2-201ENST00000607576 63 ntBASIC-2.55□□□□□ -2.82
USF3Q68DE3 RNU6-665P-201ENST00000384639 107 ntBASIC-2.56□□□□□ -2.82
USF3Q68DE3 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-2.56□□□□□ -2.82
USF3Q68DE3 RNU6-887P-201ENST00000410660 100 ntBASIC-2.56□□□□□ -2.82
USF3Q68DE3 Y_RNA.609-201ENST00000410669 89 ntBASIC-2.56□□□□□ -2.82
USF3Q68DE3 RNU6-172P-201ENST00000411000 93 ntBASIC-2.56□□□□□ -2.82
USF3Q68DE3 RNA5SP224-201ENST00000365069 126 ntBASIC-2.57□□□□□ -2.82
USF3Q68DE3 SNORA8.1-201ENST00000384250 140 ntBASIC-2.57□□□□□ -2.82
USF3Q68DE3 Y_RNA.520-201ENST00000384556 102 ntBASIC-2.57□□□□□ -2.82
USF3Q68DE3 RNU6-822P-201ENST00000362707 106 ntBASIC-2.57□□□□□ -2.82
USF3Q68DE3 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.57□□□□□ -2.82
USF3Q68DE3 RNU6-1108P-201ENST00000516308 104 ntBASIC-2.57□□□□□ -2.82
USF3Q68DE3 MIR124-1-201ENST00000385275 85 ntBASIC-2.58□□□□□ -2.82
USF3Q68DE3 MT-TL1-201ENST00000386347 75 ntBASIC-2.58□□□□□ -2.82
USF3Q68DE3 RNU6-795P-201ENST00000516323 103 ntBASIC-2.58□□□□□ -2.82
USF3Q68DE3 RNU6-713P-201ENST00000384761 107 ntBASIC-2.58□□□□□ -2.82
USF3Q68DE3 RNU4-71P-201ENST00000516258 113 ntBASIC-2.58□□□□□ -2.82
USF3Q68DE3 Y_RNA.688-201ENST00000516565 95 ntBASIC-2.58□□□□□ -2.82
USF3Q68DE3 Y_RNA.58-201ENST00000362807 102 ntBASIC-2.59□□□□□ -2.82
USF3Q68DE3 SNORD45.1-201ENST00000363181 77 ntBASIC-2.59□□□□□ -2.82
USF3Q68DE3 RNU6-915P-201ENST00000364943 103 ntBASIC-2.59□□□□□ -2.82
USF3Q68DE3 Y_RNA.516-201ENST00000384541 124 ntBASIC-2.59□□□□□ -2.82
USF3Q68DE3 SNORD58.1-201ENST00000391313 66 ntBASIC-2.59□□□□□ -2.82
USF3Q68DE3 Y_RNA.11-201ENST00000362375 109 ntBASIC-2.6□□□□□ -2.82
USF3Q68DE3 Y_RNA.17-201ENST00000362433 111 ntBASIC-2.6□□□□□ -2.82
USF3Q68DE3 Y_RNA.160-201ENST00000363677 92 ntBASIC-2.6□□□□□ -2.83
USF3Q68DE3 SNORA81.3-201ENST00000517283 198 ntBASIC-2.6□□□□□ -2.83
USF3Q68DE3 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.61□□□□□ -2.83
USF3Q68DE3 RNU6-1219P-201ENST00000516143 112 ntBASIC-2.61□□□□□ -2.83
USF3Q68DE3 SNORD113.1-201ENST00000363280 73 ntBASIC-2.61□□□□□ -2.83
USF3Q68DE3 SNORD58C-201ENST00000365223 64 ntBASIC-2.61□□□□□ -2.83
USF3Q68DE3 MIR656-201ENST00000385224 78 ntBASIC-2.61□□□□□ -2.83
USF3Q68DE3 U6.104-201ENST00000637979 90 ntBASIC-2.61□□□□□ -2.83
USF3Q68DE3 SNORD42.2-201ENST00000365570 69 ntBASIC-2.62□□□□□ -2.83
USF3Q68DE3 AL035470.1-201ENST00000622571 220 ntBASIC-2.62□□□□□ -2.83
USF3Q68DE3 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.62□□□□□ -2.83
USF3Q68DE3 RNU6-867P-201ENST00000364956 107 ntBASIC-2.62□□□□□ -2.83
USF3Q68DE3 MIR8053-201ENST00000613344 75 ntBASIC-2.62□□□□□ -2.83
USF3Q68DE3 AP001340.1-201ENST00000624405 217 ntBASIC-2.62□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 274.4 ms