Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.7□□□□□ -2.68
HDDC3Q8N4P3 RNA5SP292-201ENST00000390974 118 ntBASIC-1.7□□□□□ -2.68
HDDC3Q8N4P3 AL500527.2-201ENST00000454105 95 ntBASIC-1.7□□□□□ -2.68
HDDC3Q8N4P3 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.7□□□□□ -2.68
HDDC3Q8N4P3 RNU5F-1-201ENST00000362507 117 ntBASIC-1.71□□□□□ -2.68
HDDC3Q8N4P3 SNORA18.5-201ENST00000516616 101 ntBASIC-1.71□□□□□ -2.68
HDDC3Q8N4P3 SNORD114-17-201ENST00000364699 75 ntBASIC-1.72□□□□□ -2.68
HDDC3Q8N4P3 SNORD64-201ENST00000386683 67 ntBASIC-1.72□□□□□ -2.68
HDDC3Q8N4P3 MIR548I1-201ENST00000408810 149 ntBASIC-1.72□□□□□ -2.68
HDDC3Q8N4P3 MIR4499-201ENST00000584834 69 ntBASIC-1.72□□□□□ -2.68
HDDC3Q8N4P3 AL353803.5-201ENST00000599815 141 ntBASIC-1.72□□□□□ -2.68
HDDC3Q8N4P3 MIR4773-1-201ENST00000637203 78 ntBASIC-1.72□□□□□ -2.68
HDDC3Q8N4P3 RNU6-382P-201ENST00000365181 106 ntBASIC-1.73□□□□□ -2.69
HDDC3Q8N4P3 MIR147A-201ENST00000385079 72 ntBASIC-1.73□□□□□ -2.69
HDDC3Q8N4P3 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.73□□□□□ -2.69
HDDC3Q8N4P3 RNU7-107P-201ENST00000459121 61 ntBASIC-1.73□□□□□ -2.69
HDDC3Q8N4P3 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 RNU6-431P-201ENST00000383874 107 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 snoU83B.1-201ENST00000517136 88 ntBASIC-1.74□□□□□ -2.69
HDDC3Q8N4P3 RNU6-260P-201ENST00000384092 107 ntBASIC-1.75□□□□□ -2.69
HDDC3Q8N4P3 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.75□□□□□ -2.69
HDDC3Q8N4P3 RNU6-795P-201ENST00000516323 103 ntBASIC-1.75□□□□□ -2.69
HDDC3Q8N4P3 MIR4777-201ENST00000583710 86 ntBASIC-1.75□□□□□ -2.69
HDDC3Q8N4P3 RNU6-886P-201ENST00000384319 105 ntBASIC-1.76□□□□□ -2.69
HDDC3Q8N4P3 MIR548A3-201ENST00000385297 97 ntBASIC-1.76□□□□□ -2.69
HDDC3Q8N4P3 RNA5SP147-201ENST00000516493 109 ntBASIC-1.76□□□□□ -2.69
HDDC3Q8N4P3 MIR4306-201ENST00000583390 91 ntBASIC-1.76□□□□□ -2.69
HDDC3Q8N4P3 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.77□□□□□ -2.69
HDDC3Q8N4P3 SNORD90-201ENST00000391145 111 ntBASIC-1.77□□□□□ -2.69
HDDC3Q8N4P3 snoU13.17-201ENST00000458802 104 ntBASIC-1.77□□□□□ -2.69
HDDC3Q8N4P3 MIR6509-201ENST00000614603 85 ntBASIC-1.77□□□□□ -2.69
HDDC3Q8N4P3 RNU6-257P-201ENST00000410238 98 ntBASIC-1.78□□□□□ -2.69
HDDC3Q8N4P3 AC090617.8-201ENST00000623339 167 ntBASIC-1.78□□□□□ -2.69
HDDC3Q8N4P3 MIR1246-201ENST00000636535 73 ntBASIC-1.78□□□□□ -2.69
HDDC3Q8N4P3 MIR3914-2-201ENST00000637339 95 ntBASIC-1.78□□□□□ -2.69
HDDC3Q8N4P3 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.79□□□□□ -2.7
HDDC3Q8N4P3 MIR203A-201ENST00000384836 110 ntBASIC-1.79□□□□□ -2.7
HDDC3Q8N4P3 SNORD33.1-201ENST00000516213 88 ntBASIC-1.79□□□□□ -2.7
HDDC3Q8N4P3 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.79□□□□□ -2.7
HDDC3Q8N4P3 U6.95-201ENST00000636931 70 ntBASIC-1.79□□□□□ -2.7
HDDC3Q8N4P3 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.8□□□□□ -2.7
HDDC3Q8N4P3 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.8□□□□□ -2.7
HDDC3Q8N4P3 AC012531.4-201ENST00000616509 177 ntBASIC-1.8□□□□□ -2.7
HDDC3Q8N4P3 MIR382-201ENST00000637119 76 ntBASIC-1.8□□□□□ -2.7
HDDC3Q8N4P3 SNORA2.1-201ENST00000363089 137 ntBASIC-1.81□□□□□ -2.7
HDDC3Q8N4P3 RNU6-972P-201ENST00000391208 107 ntBASIC-1.81□□□□□ -2.7
HDDC3Q8N4P3 AL691482.2-201ENST00000457453 84 ntBASIC-1.81□□□□□ -2.7
HDDC3Q8N4P3 RNU7-200P-201ENST00000516105 62 ntBASIC-1.81□□□□□ -2.7
HDDC3Q8N4P3 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.82□□□□□ -2.7
HDDC3Q8N4P3 SNORA33.1-201ENST00000364957 130 ntBASIC-1.82□□□□□ -2.7
HDDC3Q8N4P3 MIR1255B2-201ENST00000408618 67 ntBASIC-1.82□□□□□ -2.7
HDDC3Q8N4P3 SCARNA18B-201ENST00000458806 135 ntBASIC-1.82□□□□□ -2.7
HDDC3Q8N4P3 RNU6-971P-201ENST00000516920 106 ntBASIC-1.82□□□□□ -2.7
HDDC3Q8N4P3 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.83□□□□□ -2.7
HDDC3Q8N4P3 MIR4464-201ENST00000580818 92 ntBASIC-1.83□□□□□ -2.7
HDDC3Q8N4P3 AL445584.3-201ENST00000617173 78 ntBASIC-1.83□□□□□ -2.7
HDDC3Q8N4P3 RNU6-824P-201ENST00000363724 104 ntBASIC-1.84□□□□□ -2.7
HDDC3Q8N4P3 RNU6-706P-201ENST00000517229 104 ntBASIC-1.84□□□□□ -2.7
HDDC3Q8N4P3 MIR3657-201ENST00000584818 117 ntBASIC-1.84□□□□□ -2.7
HDDC3Q8N4P3 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.85□□□□□ -2.71
HDDC3Q8N4P3 SNORD58A-201ENST00000383875 65 ntBASIC-1.85□□□□□ -2.71
HDDC3Q8N4P3 RNU6-887P-201ENST00000410660 100 ntBASIC-1.85□□□□□ -2.71
HDDC3Q8N4P3 SCARNA23-201ENST00000516060 130 ntBASIC-1.85□□□□□ -2.71
HDDC3Q8N4P3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.85□□□□□ -2.71
HDDC3Q8N4P3 MIR6888-201ENST00000621977 67 ntBASIC-1.85□□□□□ -2.71
HDDC3Q8N4P3 RNU6-924P-201ENST00000362926 108 ntBASIC-1.86□□□□□ -2.71
HDDC3Q8N4P3 RNU6-80P-201ENST00000384195 107 ntBASIC-1.86□□□□□ -2.71
HDDC3Q8N4P3 RNU6-412P-201ENST00000516434 106 ntBASIC-1.86□□□□□ -2.71
HDDC3Q8N4P3 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.87□□□□□ -2.71
HDDC3Q8N4P3 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.87□□□□□ -2.71
HDDC3Q8N4P3 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.88□□□□□ -2.71
HDDC3Q8N4P3 CYP3A54P-201ENST00000566950 75 ntBASIC-1.88□□□□□ -2.71
HDDC3Q8N4P3 MIR4719-201ENST00000585233 84 ntBASIC-1.88□□□□□ -2.71
HDDC3Q8N4P3 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.9□□□□□ -2.71
HDDC3Q8N4P3 RNU6-880P-201ENST00000384526 107 ntBASIC-1.9□□□□□ -2.71
HDDC3Q8N4P3 MIR4796-201ENST00000580742 81 ntBASIC-1.9□□□□□ -2.71
HDDC3Q8N4P3 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.9□□□□□ -2.71
HDDC3Q8N4P3 SNORD116-10-201ENST00000363791 102 ntBASIC-1.91□□□□□ -2.72
HDDC3Q8N4P3 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.91□□□□□ -2.72
HDDC3Q8N4P3 AC026421.1-201ENST00000519101 163 ntBASIC-1.91□□□□□ -2.72
HDDC3Q8N4P3 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.91□□□□□ -2.72
HDDC3Q8N4P3 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.92□□□□□ -2.72
HDDC3Q8N4P3 U6.81-201ENST00000612550 106 ntBASIC-1.92□□□□□ -2.72
HDDC3Q8N4P3 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.93□□□□□ -2.72
HDDC3Q8N4P3 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.93□□□□□ -2.72
HDDC3Q8N4P3 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.93□□□□□ -2.72
HDDC3Q8N4P3 RNU6-904P-201ENST00000516206 101 ntBASIC-1.93□□□□□ -2.72
HDDC3Q8N4P3 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.94□□□□□ -2.72
HDDC3Q8N4P3 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.94□□□□□ -2.72
HDDC3Q8N4P3 SNORA19.1-201ENST00000410656 129 ntBASIC-1.94□□□□□ -2.72
HDDC3Q8N4P3 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.94□□□□□ -2.72
HDDC3Q8N4P3 RNU6-346P-201ENST00000516288 111 ntBASIC-1.94□□□□□ -2.72
HDDC3Q8N4P3 MIR1236-201ENST00000408340 102 ntBASIC-1.95□□□□□ -2.72
HDDC3Q8N4P3 RNU6-659P-201ENST00000516454 104 ntBASIC-1.95□□□□□ -2.72
HDDC3Q8N4P3 AC099654.10-201ENST00000640395 161 ntBASIC-1.95□□□□□ -2.72
HDDC3Q8N4P3 MIR521-2-201ENST00000384818 87 ntBASIC-1.96□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 201.2 ms