Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 AC006210.1-201ENST00000424882 111 ntBASIC1□□□□□ -2.25
FOXD3Q9UJU5 ACA64.5-201ENST00000516207 127 ntBASIC1□□□□□ -2.25
FOXD3Q9UJU5 AC211469.2-201ENST00000605461 205 ntBASIC1□□□□□ -2.25
FOXD3Q9UJU5 SNORD45.1-201ENST00000363181 77 ntBASIC0.99□□□□□ -2.25
FOXD3Q9UJU5 RNY1P8-201ENST00000383970 114 ntBASIC0.99□□□□□ -2.25
FOXD3Q9UJU5 AC139453.2-201ENST00000487255 133 ntBASIC0.99□□□□□ -2.25
FOXD3Q9UJU5 RNU6-1223P-201ENST00000517124 104 ntBASIC0.99□□□□□ -2.25
FOXD3Q9UJU5 MIR151B-201ENST00000584249 96 ntBASIC0.99□□□□□ -2.25
FOXD3Q9UJU5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
FOXD3Q9UJU5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
FOXD3Q9UJU5 MIR520E-201ENST00000384867 87 ntBASIC0.98□□□□□ -2.25
FOXD3Q9UJU5 SNORD110-201ENST00000408189 75 ntBASIC0.98□□□□□ -2.25
FOXD3Q9UJU5 MIR5706-201ENST00000579841 80 ntBASIC0.98□□□□□ -2.25
FOXD3Q9UJU5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 SNORA40.8-201ENST00000411034 126 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 RPS29P1-201ENST00000465274 159 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 RNU6-539P-201ENST00000516665 103 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 RNU5B-6P-201ENST00000516765 68 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 MIR6779-201ENST00000617283 64 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 MIR6788-201ENST00000618842 66 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
FOXD3Q9UJU5 SNORD118-201ENST00000363593 134 ntBASIC0.96□□□□□ -2.26
FOXD3Q9UJU5 MIR598-201ENST00000384868 97 ntBASIC0.96□□□□□ -2.26
FOXD3Q9UJU5 SNORD71-201ENST00000411292 86 ntBASIC0.96□□□□□ -2.26
FOXD3Q9UJU5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 SNORD114-27-201ENST00000363766 70 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 SNORD115-22-201ENST00000364456 82 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 Y_RNA.407-201ENST00000383986 113 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 RNU6-260P-201ENST00000384092 107 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 RNU6-604P-201ENST00000390917 100 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 AL590095.2-201ENST00000604136 117 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 MIR6857-201ENST00000613267 93 ntBASIC0.95□□□□□ -2.26
FOXD3Q9UJU5 SNORA2.1-201ENST00000363089 137 ntBASIC0.94□□□□□ -2.26
FOXD3Q9UJU5 PSMC1P5-201ENST00000512850 177 ntBASIC0.94□□□□□ -2.26
FOXD3Q9UJU5 AC018659.1-201ENST00000551083 169 ntBASIC0.94□□□□□ -2.26
FOXD3Q9UJU5 MIR3657-201ENST00000584818 117 ntBASIC0.94□□□□□ -2.26
FOXD3Q9UJU5 SNORD115-31-201ENST00000365318 82 ntBASIC0.93□□□□□ -2.26
FOXD3Q9UJU5 RNU6-895P-201ENST00000384125 103 ntBASIC0.93□□□□□ -2.26
FOXD3Q9UJU5 SNORA25.18-201ENST00000607153 114 ntBASIC0.93□□□□□ -2.26
FOXD3Q9UJU5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
FOXD3Q9UJU5 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 RNU6-590P-201ENST00000365039 107 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 RNU6-649P-201ENST00000384463 107 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 RNU6-540P-201ENST00000384622 101 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 MIR548J-201ENST00000408833 112 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 RNU6-881P-201ENST00000516813 102 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 SNORD114-21-201ENST00000606412 72 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.92□□□□□ -2.26
FOXD3Q9UJU5 Y_RNA.250-201ENST00000364542 110 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 SNORD45A-201ENST00000384512 84 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 MIR203A-201ENST00000384836 110 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 RNU6-848P-201ENST00000515948 107 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 RNU6-617P-201ENST00000516147 107 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 RNU6-473P-201ENST00000516164 107 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 RNU6-1049P-201ENST00000516414 107 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 U7.6-201ENST00000610841 64 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 SNORA70.25-201ENST00000612741 95 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 MIR6767-201ENST00000637302 66 ntBASIC0.91□□□□□ -2.26
FOXD3Q9UJU5 RNA5SP325-201ENST00000363756 130 ntBASIC0.9□□□□□ -2.27
FOXD3Q9UJU5 MIR518A1-201ENST00000385068 85 ntBASIC0.9□□□□□ -2.27
FOXD3Q9UJU5 SNORD30.1-201ENST00000391309 70 ntBASIC0.9□□□□□ -2.27
FOXD3Q9UJU5 AC069271.1-201ENST00000445577 156 ntBASIC0.9□□□□□ -2.27
FOXD3Q9UJU5 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
FOXD3Q9UJU5 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 SNORD113.1-201ENST00000363280 73 ntBASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 RNU4-38P-201ENST00000364472 129 ntBASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 MIR532-201ENST00000385025 91 ntBASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 RNU6-663P-201ENST00000391105 106 ntBASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 SCARNA17.3-201ENST00000516381 125 ntBASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 RNU1-29P-201ENST00000606574 126 ntBASIC0.89□□□□□ -2.27
FOXD3Q9UJU5 MIR4752-201ENST00000579672 72 ntBASIC0.88□□□□□ -2.27
FOXD3Q9UJU5 MIR4473-201ENST00000583731 91 ntBASIC0.88□□□□□ -2.27
FOXD3Q9UJU5 MIR4653-201ENST00000585107 83 ntBASIC0.88□□□□□ -2.27
FOXD3Q9UJU5 SNORA2A-201ENST00000383885 135 ntBASIC0.87□□□□□ -2.27
FOXD3Q9UJU5 RNU6-788P-201ENST00000390967 104 ntBASIC0.87□□□□□ -2.27
FOXD3Q9UJU5 uc_338.10-201ENST00000621872 182 ntBASIC0.87□□□□□ -2.27
FOXD3Q9UJU5 RNU6-1216P-201ENST00000362590 107 ntBASIC0.86□□□□□ -2.27
FOXD3Q9UJU5 RNU6-990P-201ENST00000364385 104 ntBASIC0.86□□□□□ -2.27
FOXD3Q9UJU5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.86□□□□□ -2.27
FOXD3Q9UJU5 RNU6-863P-201ENST00000515989 104 ntBASIC0.86□□□□□ -2.27
FOXD3Q9UJU5 MIR652-201ENST00000385278 98 ntBASIC0.85□□□□□ -2.27
FOXD3Q9UJU5 AC098934.3-201ENST00000430450 190 ntBASIC0.85□□□□□ -2.27
FOXD3Q9UJU5 U6.111-201ENST00000636093 83 ntBASIC0.85□□□□□ -2.27
FOXD3Q9UJU5 Y_RNA.125-201ENST00000363371 111 ntBASIC0.84□□□□□ -2.27
FOXD3Q9UJU5 HMGN2P22-201ENST00000427588 175 ntBASIC0.84□□□□□ -2.27
FOXD3Q9UJU5 MTND4LP1-201ENST00000446263 157 ntBASIC0.84□□□□□ -2.27
FOXD3Q9UJU5 SNORA40.17-201ENST00000517256 115 ntBASIC0.84□□□□□ -2.27
FOXD3Q9UJU5 MIR548AE1-201ENST00000583292 70 ntBASIC0.84□□□□□ -2.27
FOXD3Q9UJU5 RNU6-229P-201ENST00000516614 102 ntBASIC0.83□□□□□ -2.28
FOXD3Q9UJU5 MIR5000-201ENST00000577717 103 ntBASIC0.83□□□□□ -2.28
FOXD3Q9UJU5 MIR6739-201ENST00000622461 75 ntBASIC0.83□□□□□ -2.28
FOXD3Q9UJU5 Y_RNA.205-201ENST00000364128 113 ntBASIC0.82□□□□□ -2.28
FOXD3Q9UJU5 MIR373-201ENST00000362273 69 ntBASIC0.81□□□□□ -2.28
FOXD3Q9UJU5 CYP3A137P-201ENST00000562436 69 ntBASIC0.81□□□□□ -2.28
FOXD3Q9UJU5 RN7SL793P-201ENST00000583259 296 ntBASIC0.81□□□□□ -2.28
FOXD3Q9UJU5 RNU6-645P-201ENST00000364649 106 ntBASIC0.79□□□□□ -2.28
FOXD3Q9UJU5 SNORA63.6-201ENST00000364921 119 ntBASIC0.79□□□□□ -2.28
FOXD3Q9UJU5 Y_RNA.423-201ENST00000384057 113 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 275.1 ms