Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 RNU6-726P-201ENST00000364680 107 ntBASIC1.16□□□□□ -2.22
USP40Q9NVE5 MIR19B1-201ENST00000384829 87 ntBASIC1.16□□□□□ -2.22
USP40Q9NVE5 RNA5SP47-201ENST00000517230 109 ntBASIC1.16□□□□□ -2.22
USP40Q9NVE5 MIR4639-201ENST00000584938 69 ntBASIC1.16□□□□□ -2.22
USP40Q9NVE5 SNORD105-201ENST00000386910 85 ntBASIC1.15□□□□□ -2.23
USP40Q9NVE5 AC211469.2-201ENST00000605461 205 ntBASIC1.15□□□□□ -2.23
USP40Q9NVE5 AC073869.9-201ENST00000641610 120 ntBASIC1.15□□□□□ -2.23
USP40Q9NVE5 RNU1-124P-201ENST00000363861 145 ntBASIC1.14□□□□□ -2.23
USP40Q9NVE5 RNA5SP117-201ENST00000365294 118 ntBASIC1.14□□□□□ -2.23
USP40Q9NVE5 MIR532-201ENST00000385025 91 ntBASIC1.14□□□□□ -2.23
USP40Q9NVE5 MT-TY-201ENST00000387409 66 ntBASIC1.14□□□□□ -2.23
USP40Q9NVE5 AC110620.1-201ENST00000416042 228 ntBASIC1.14□□□□□ -2.23
USP40Q9NVE5 RNU6-1110P-201ENST00000516462 101 ntBASIC1.14□□□□□ -2.23
USP40Q9NVE5 RNU6-716P-201ENST00000365621 103 ntBASIC1.13□□□□□ -2.23
USP40Q9NVE5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.13□□□□□ -2.23
USP40Q9NVE5 MIR3678-201ENST00000578455 94 ntBASIC1.13□□□□□ -2.23
USP40Q9NVE5 MIR6857-201ENST00000613267 93 ntBASIC1.13□□□□□ -2.23
USP40Q9NVE5 AC103706.3-201ENST00000636297 85 ntBASIC1.13□□□□□ -2.23
USP40Q9NVE5 RNU6-645P-201ENST00000364649 106 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 SNORD114-24-201ENST00000365029 72 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 RNU6-669P-201ENST00000365575 107 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 MIR573-201ENST00000384964 99 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 RNU6-269P-201ENST00000391077 97 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 RNA5SP436-201ENST00000516020 115 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 MIR3612-201ENST00000579753 87 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 AC103810.9-201ENST00000606688 112 ntBASIC1.12□□□□□ -2.23
USP40Q9NVE5 RNA5SP325-201ENST00000363756 130 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 RNU1-141P-201ENST00000364623 158 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 RNU6-260P-201ENST00000384092 107 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 MIR200A-201ENST00000384875 90 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 RNA5SP484-201ENST00000458857 111 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 RNA5SP147-201ENST00000516493 109 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 AC018659.1-201ENST00000551083 169 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 MIR5000-201ENST00000577717 103 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 MIR4698-201ENST00000577795 80 ntBASIC1.11□□□□□ -2.23
USP40Q9NVE5 RNU6-499P-201ENST00000365615 107 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 Y_RNA.375-201ENST00000365625 101 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 MIR633-201ENST00000384821 98 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 MIR216B-201ENST00000390186 82 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 FABP5P4-201ENST00000437203 171 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 U7.7-201ENST00000459276 60 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.1□□□□□ -2.23
USP40Q9NVE5 RNU6-656P-201ENST00000516785 107 ntBASIC1.1□□□□□ -2.23
USP40Q9NVE5 MTND4LP19-201ENST00000403051 166 ntBASIC1.09□□□□□ -2.23
USP40Q9NVE5 RNU5B-6P-201ENST00000516765 68 ntBASIC1.09□□□□□ -2.23
USP40Q9NVE5 SNORA2.1-201ENST00000363089 137 ntBASIC1.08□□□□□ -2.24
USP40Q9NVE5 SNORA36.1-201ENST00000363424 132 ntBASIC1.08□□□□□ -2.24
USP40Q9NVE5 RNU6-135P-201ENST00000516769 101 ntBASIC1.08□□□□□ -2.24
USP40Q9NVE5 SCARNA16.5-201ENST00000517114 183 ntBASIC1.08□□□□□ -2.24
USP40Q9NVE5 CYP3A137P-201ENST00000562436 69 ntBASIC1.08□□□□□ -2.24
USP40Q9NVE5 MIR4460-201ENST00000577862 86 ntBASIC1.08□□□□□ -2.24
USP40Q9NVE5 RNU6-668P-201ENST00000364180 107 ntBASIC1.07□□□□□ -2.24
USP40Q9NVE5 RNU6-469P-201ENST00000516253 101 ntBASIC1.07□□□□□ -2.24
USP40Q9NVE5 AC092634.7-201ENST00000621022 103 ntBASIC1.07□□□□□ -2.24
USP40Q9NVE5 AL162376.1-201ENST00000624117 175 ntBASIC1.07□□□□□ -2.24
USP40Q9NVE5 MIR6828-201ENST00000636181 60 ntBASIC1.07□□□□□ -2.24
USP40Q9NVE5 snoU13.13-201ENST00000458842 104 ntBASIC1.06□□□□□ -2.24
USP40Q9NVE5 AC069503.3-201ENST00000618674 145 ntBASIC1.06□□□□□ -2.24
USP40Q9NVE5 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
USP40Q9NVE5 MIR548L-201ENST00000408303 86 ntBASIC1.05□□□□□ -2.24
USP40Q9NVE5 AC079150.2-201ENST00000443733 78 ntBASIC1.05□□□□□ -2.24
USP40Q9NVE5 RNU7-74P-201ENST00000459104 62 ntBASIC1.05□□□□□ -2.24
USP40Q9NVE5 MIR548AE1-201ENST00000583292 70 ntBASIC1.05□□□□□ -2.24
USP40Q9NVE5 MIR6739-201ENST00000622461 75 ntBASIC1.05□□□□□ -2.24
USP40Q9NVE5 MIR18A-201ENST00000362310 71 ntBASIC1.04□□□□□ -2.24
USP40Q9NVE5 SNORA8.2-201ENST00000384372 139 ntBASIC1.04□□□□□ -2.24
USP40Q9NVE5 MTND4LP1-201ENST00000446263 157 ntBASIC1.04□□□□□ -2.24
USP40Q9NVE5 RNA5SP255-201ENST00000516370 107 ntBASIC1.04□□□□□ -2.24
USP40Q9NVE5 MIR582-201ENST00000365731 98 ntBASIC1.03□□□□□ -2.24
USP40Q9NVE5 RNU6-987P-201ENST00000384759 104 ntBASIC1.03□□□□□ -2.24
USP40Q9NVE5 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
USP40Q9NVE5 RNA5SP192-201ENST00000364404 120 ntBASIC1.02□□□□□ -2.25
USP40Q9NVE5 RNA5SP299-201ENST00000391203 116 ntBASIC1.02□□□□□ -2.25
USP40Q9NVE5 RNU4-37P-201ENST00000410214 84 ntBASIC1.02□□□□□ -2.25
USP40Q9NVE5 SCARNA21.1-201ENST00000515996 128 ntBASIC1.02□□□□□ -2.25
USP40Q9NVE5 RNU6-542P-201ENST00000516405 103 ntBASIC1.02□□□□□ -2.25
USP40Q9NVE5 RN7SL793P-201ENST00000583259 296 ntBASIC1.02□□□□□ -2.25
USP40Q9NVE5 RNU6-829P-201ENST00000363700 112 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 RNY1P8-201ENST00000383970 114 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 SNORA75.1-201ENST00000391130 148 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 SNORD99-201ENST00000408612 74 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 AL157398.1-201ENST00000452981 186 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 MIR4661-201ENST00000582720 75 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.01□□□□□ -2.25
USP40Q9NVE5 MIR7107-201ENST00000611489 80 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.01□□□□□ -2.25
USP40Q9NVE5 MIR216A-201ENST00000385063 110 ntBASIC1□□□□□ -2.25
USP40Q9NVE5 RNU6-1089P-201ENST00000516473 104 ntBASIC1□□□□□ -2.25
USP40Q9NVE5 AC011195.1-201ENST00000578177 177 ntBASIC1□□□□□ -2.25
USP40Q9NVE5 RNU1-29P-201ENST00000606574 126 ntBASIC1□□□□□ -2.25
USP40Q9NVE5 SNORA70.25-201ENST00000612741 95 ntBASIC1□□□□□ -2.25
USP40Q9NVE5 RNU6-446P-201ENST00000362827 106 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 RNU6-1079P-201ENST00000362861 110 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 SNORA25.5-201ENST00000363782 126 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 MIR652-201ENST00000385278 98 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 Y_RNA.633-201ENST00000459107 95 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 RNA5SP94-201ENST00000516917 108 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 MIR4752-201ENST00000579672 72 ntBASIC0.99□□□□□ -2.25
USP40Q9NVE5 RPL39P28-201ENST00000465655 155 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 341 ms