Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.41□□□□□ -2.18
ATG3Q9NT62 RNU6-656P-201ENST00000516785 107 ntBASIC1.41□□□□□ -2.18
ATG3Q9NT62 RNA5SP117-201ENST00000365294 118 ntBASIC1.4□□□□□ -2.19
ATG3Q9NT62 SNORD89-201ENST00000390981 114 ntBASIC1.4□□□□□ -2.19
ATG3Q9NT62 SNORD12-201ENST00000391002 90 ntBASIC1.4□□□□□ -2.19
ATG3Q9NT62 RNU6-542P-201ENST00000516405 103 ntBASIC1.4□□□□□ -2.19
ATG3Q9NT62 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
ATG3Q9NT62 SNORD18A-201ENST00000363753 72 ntBASIC1.39□□□□□ -2.19
ATG3Q9NT62 RNA5SP192-201ENST00000364404 120 ntBASIC1.39□□□□□ -2.19
ATG3Q9NT62 RNU6-726P-201ENST00000364680 107 ntBASIC1.39□□□□□ -2.19
ATG3Q9NT62 RNU6-939P-201ENST00000384634 107 ntBASIC1.39□□□□□ -2.19
ATG3Q9NT62 MT-TY-201ENST00000387409 66 ntBASIC1.39□□□□□ -2.19
ATG3Q9NT62 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
ATG3Q9NT62 MIR4639-201ENST00000584938 69 ntBASIC1.39□□□□□ -2.19
ATG3Q9NT62 SNORD114-26-201ENST00000363543 72 ntBASIC1.38□□□□□ -2.19
ATG3Q9NT62 RNU1-124P-201ENST00000363861 145 ntBASIC1.38□□□□□ -2.19
ATG3Q9NT62 SNORD114-21-201ENST00000606412 72 ntBASIC1.38□□□□□ -2.19
ATG3Q9NT62 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
ATG3Q9NT62 RNU6-1079P-201ENST00000362861 110 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 SNORA2.1-201ENST00000363089 137 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 SNORA25.5-201ENST00000363782 126 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 RNU6-614P-201ENST00000384369 107 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 AC018659.1-201ENST00000551083 169 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 U6.59-201ENST00000615686 107 ntBASIC1.37□□□□□ -2.19
ATG3Q9NT62 Y_RNA.236-201ENST00000364427 111 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 RNU1-141P-201ENST00000364623 158 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 RNU6-1335P-201ENST00000365426 107 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 RNU6-716P-201ENST00000365621 103 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 MIR19B1-201ENST00000384829 87 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 MIR598-201ENST00000384868 97 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 SNORD105-201ENST00000386910 85 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 RNU5B-6P-201ENST00000516765 68 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 RNA5SP47-201ENST00000517230 109 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 MIR4460-201ENST00000577862 86 ntBASIC1.36□□□□□ -2.19
ATG3Q9NT62 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.36□□□□□ -2.19
ATG3Q9NT62 RNU6-269P-201ENST00000391077 97 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 RNA5SP299-201ENST00000391203 116 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 RNU6-141P-201ENST00000410499 105 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 SCARNA21.1-201ENST00000515996 128 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 RNU6-1110P-201ENST00000516462 101 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 MIR3678-201ENST00000578455 94 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 MIR466-201ENST00000580653 84 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 MIR6779-201ENST00000617283 64 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 MIR6739-201ENST00000622461 75 ntBASIC1.35□□□□□ -2.19
ATG3Q9NT62 RNU6-446P-201ENST00000362827 106 ntBASIC1.34□□□□□ -2.19
ATG3Q9NT62 snoU13.13-201ENST00000458842 104 ntBASIC1.34□□□□□ -2.19
ATG3Q9NT62 MIR3973-201ENST00000579824 107 ntBASIC1.34□□□□□ -2.19
ATG3Q9NT62 MIR548L-201ENST00000408303 86 ntBASIC1.33□□□□□ -2.2
ATG3Q9NT62 RNU7-74P-201ENST00000459104 62 ntBASIC1.33□□□□□ -2.2
ATG3Q9NT62 RNU6-1089P-201ENST00000516473 104 ntBASIC1.33□□□□□ -2.2
ATG3Q9NT62 RNU6-135P-201ENST00000516769 101 ntBASIC1.33□□□□□ -2.2
ATG3Q9NT62 MIR5000-201ENST00000577717 103 ntBASIC1.33□□□□□ -2.2
ATG3Q9NT62 RNA5SP484-201ENST00000458857 111 ntBASIC1.32□□□□□ -2.2
ATG3Q9NT62 SNORD124-201ENST00000459577 104 ntBASIC1.32□□□□□ -2.2
ATG3Q9NT62 RNU6-469P-201ENST00000516253 101 ntBASIC1.32□□□□□ -2.2
ATG3Q9NT62 AC211469.2-201ENST00000605461 205 ntBASIC1.32□□□□□ -2.2
ATG3Q9NT62 RNU4-38P-201ENST00000364472 129 ntBASIC1.31□□□□□ -2.2
ATG3Q9NT62 SNORA75.1-201ENST00000391130 148 ntBASIC1.31□□□□□ -2.2
ATG3Q9NT62 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.31□□□□□ -2.2
ATG3Q9NT62 U7.7-201ENST00000459276 60 ntBASIC1.31□□□□□ -2.2
ATG3Q9NT62 MIR3612-201ENST00000579753 87 ntBASIC1.31□□□□□ -2.2
ATG3Q9NT62 MIR573-201ENST00000384964 99 ntBASIC1.3□□□□□ -2.2
ATG3Q9NT62 AL157398.1-201ENST00000452981 186 ntBASIC1.3□□□□□ -2.2
ATG3Q9NT62 OR2A41P-201ENST00000473586 105 ntBASIC1.29□□□□□ -2.2
ATG3Q9NT62 MIR548V-201ENST00000584165 80 ntBASIC1.29□□□□□ -2.2
ATG3Q9NT62 RNU6-940P-201ENST00000363433 104 ntBASIC1.28□□□□□ -2.2
ATG3Q9NT62 RNA5SP215-201ENST00000363440 122 ntBASIC1.28□□□□□ -2.2
ATG3Q9NT62 SNORA8.2-201ENST00000384372 139 ntBASIC1.28□□□□□ -2.2
ATG3Q9NT62 MIR532-201ENST00000385025 91 ntBASIC1.28□□□□□ -2.2
ATG3Q9NT62 MIR1285-1-201ENST00000408593 84 ntBASIC1.28□□□□□ -2.2
ATG3Q9NT62 SCARNA16.5-201ENST00000517114 183 ntBASIC1.28□□□□□ -2.2
ATG3Q9NT62 RNA5SP325-201ENST00000363756 130 ntBASIC1.27□□□□□ -2.21
ATG3Q9NT62 SNORD113-4-201ENST00000364802 75 ntBASIC1.27□□□□□ -2.21
ATG3Q9NT62 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.27□□□□□ -2.21
ATG3Q9NT62 AL162376.1-201ENST00000624117 175 ntBASIC1.27□□□□□ -2.21
ATG3Q9NT62 SNORA36.1-201ENST00000363424 132 ntBASIC1.26□□□□□ -2.21
ATG3Q9NT62 FABP5P4-201ENST00000437203 171 ntBASIC1.26□□□□□ -2.21
ATG3Q9NT62 CYP3A137P-201ENST00000562436 69 ntBASIC1.26□□□□□ -2.21
ATG3Q9NT62 MIR6828-201ENST00000636181 60 ntBASIC1.26□□□□□ -2.21
ATG3Q9NT62 MIR521-2-201ENST00000384818 87 ntBASIC1.25□□□□□ -2.21
ATG3Q9NT62 MIR200A-201ENST00000384875 90 ntBASIC1.25□□□□□ -2.21
ATG3Q9NT62 MIR630-201ENST00000384957 97 ntBASIC1.25□□□□□ -2.21
ATG3Q9NT62 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
ATG3Q9NT62 MIR548AE1-201ENST00000583292 70 ntBASIC1.25□□□□□ -2.21
ATG3Q9NT62 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
ATG3Q9NT62 SNORD60.1-201ENST00000362451 73 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 SNORD114-24-201ENST00000365029 72 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 MIR582-201ENST00000365731 98 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 Y_RNA.633-201ENST00000459107 95 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 RNU6-122P-201ENST00000516818 107 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 RNU6-92P-201ENST00000605893 104 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 MIR6857-201ENST00000613267 93 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 MIR7978-201ENST00000636158 59 ntBASIC1.24□□□□□ -2.21
ATG3Q9NT62 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
ATG3Q9NT62 RNU6-1162P-201ENST00000384443 104 ntBASIC1.23□□□□□ -2.21
ATG3Q9NT62 MIR548C-201ENST00000384815 97 ntBASIC1.23□□□□□ -2.21
ATG3Q9NT62 MIR652-201ENST00000385278 98 ntBASIC1.23□□□□□ -2.21
ATG3Q9NT62 U2.7-201ENST00000619197 100 ntBASIC1.23□□□□□ -2.21
ATG3Q9NT62 SNORD114-4-201ENST00000363962 75 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 226.7 ms