Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC015540.1-201ENST00000615828 501 ntBASIC-3.25□□□□□ -2.93
CUX1P39880 RNU6-103P-201ENST00000363686 107 ntBASIC-3.26□□□□□ -2.93
CUX1P39880 RNY1P1-201ENST00000364372 112 ntBASIC-3.26□□□□□ -2.93
CUX1P39880 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-3.26□□□□□ -2.93
CUX1P39880 RNU6-1046P-201ENST00000516538 107 ntBASIC-3.26□□□□□ -2.93
CUX1P39880 RNU6-807P-201ENST00000516805 107 ntBASIC-3.26□□□□□ -2.93
CUX1P39880 MIR548A3-201ENST00000385297 97 ntBASIC-3.27□□□□□ -2.93
CUX1P39880 MT-TI-201ENST00000387365 69 ntBASIC-3.27□□□□□ -2.93
CUX1P39880 MIR3163-201ENST00000581592 73 ntBASIC-3.27□□□□□ -2.93
CUX1P39880 MIR5690-201ENST00000583739 73 ntBASIC-3.27□□□□□ -2.93
CUX1P39880 Y_RNA.541-201ENST00000384640 113 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 MIR548AA1-201ENST00000384971 97 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 SNORD90-201ENST00000391145 111 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 Y_RNA.646-201ENST00000410980 101 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 RNU6-130P-201ENST00000411112 103 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 RNU6-656P-201ENST00000516785 107 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 MIR548Z-201ENST00000584743 97 ntBASIC-3.28□□□□□ -2.93
CUX1P39880 MIR369-201ENST00000362155 70 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 SNORA25.1-201ENST00000362326 128 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 RNU6-834P-201ENST00000362367 110 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 RNU6-151P-201ENST00000364158 107 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 Y_RNA.325-201ENST00000365171 122 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 RNU6-409P-201ENST00000384114 104 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 SNORA40.14-201ENST00000516543 86 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 SNORA20.3-201ENST00000516880 132 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 AC104996.3-201ENST00000590718 94 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 AC037487.3-201ENST00000606668 112 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 MIR4272-201ENST00000635924 64 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 SNORD114-13-201ENST00000364377 74 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 RNU6-309P-201ENST00000364573 106 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 RNU6-106P-201ENST00000384405 107 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 MIR759-201ENST00000390224 91 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 RNU6-519P-201ENST00000410590 108 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 MTND3P2-201ENST00000438452 342 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 MTND1P29-201ENST00000448112 647 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 SNORD11.1-201ENST00000459482 85 ntBASIC-3.29□□□□□ -2.94
CUX1P39880 Y_RNA.41-201ENST00000362646 102 ntBASIC-3.3□□□□□ -2.94
CUX1P39880 RNU6-645P-201ENST00000364649 106 ntBASIC-3.3□□□□□ -2.94
CUX1P39880 RNU6-643P-201ENST00000384018 107 ntBASIC-3.3□□□□□ -2.94
CUX1P39880 Y_RNA.467-201ENST00000384297 102 ntBASIC-3.3□□□□□ -2.94
CUX1P39880 Y_RNA.657-201ENST00000515983 102 ntBASIC-3.3□□□□□ -2.94
CUX1P39880 RNU6-699P-201ENST00000517081 110 ntBASIC-3.3□□□□□ -2.94
CUX1P39880 RNU6-1081P-201ENST00000384537 107 ntBASIC-3.31□□□□□ -2.94
CUX1P39880 RNU6-310P-201ENST00000384655 107 ntBASIC-3.31□□□□□ -2.94
CUX1P39880 SNORD4B-201ENST00000459083 72 ntBASIC-3.31□□□□□ -2.94
CUX1P39880 SNORA18.5-201ENST00000516616 101 ntBASIC-3.31□□□□□ -2.94
CUX1P39880 AL513043.2-201ENST00000573941 143 ntBASIC-3.31□□□□□ -2.94
CUX1P39880 MIR376A1-201ENST00000616574 68 ntBASIC-3.31□□□□□ -2.94
CUX1P39880 RNU6-340P-201ENST00000364005 107 ntBASIC-3.32□□□□□ -2.94
CUX1P39880 SNORD18B-201ENST00000365659 72 ntBASIC-3.32□□□□□ -2.94
CUX1P39880 Y_RNA.395-201ENST00000383945 109 ntBASIC-3.32□□□□□ -2.94
CUX1P39880 Y_RNA.652-201ENST00000458902 102 ntBASIC-3.32□□□□□ -2.94
CUX1P39880 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-3.32□□□□□ -2.94
CUX1P39880 MIR429-201ENST00000362106 83 ntBASIC-3.33□□□□□ -2.94
CUX1P39880 RNU6-1289P-201ENST00000384431 106 ntBASIC-3.33□□□□□ -2.94
CUX1P39880 RNU6-530P-201ENST00000391180 107 ntBASIC-3.33□□□□□ -2.94
CUX1P39880 Y_RNA.612-201ENST00000410717 95 ntBASIC-3.33□□□□□ -2.94
CUX1P39880 Y_RNA.163-201ENST00000363702 113 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 SNORD81.2-201ENST00000365153 76 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 RNU6-669P-201ENST00000365575 107 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 RNU6-578P-201ENST00000390980 103 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 AC025253.1-201ENST00000613623 543 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 Y_RNA.63-201ENST00000362841 102 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 RNU6-238P-201ENST00000363313 106 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 SNORD60-201ENST00000383903 83 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 Y_RNA.445-201ENST00000384168 102 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 MT-TW-201ENST00000387382 68 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 SNORD63.2-201ENST00000516303 64 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 MTRNR2L9-201ENST00000622562 75 ntBASIC-3.34□□□□□ -2.94
CUX1P39880 Y_RNA.155-201ENST00000363632 101 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 RNU6-818P-201ENST00000364837 108 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 RNU6-290P-201ENST00000365212 101 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 RNU6-1119P-201ENST00000384349 108 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 Y_RNA.581-201ENST00000391017 97 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 RNU6-780P-201ENST00000391030 104 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 Y_RNA.651-201ENST00000459380 103 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 DLEU2_1.1-201ENST00000612089 120 ntBASIC-3.35□□□□□ -2.95
CUX1P39880 RNU6-1188P-201ENST00000363795 107 ntBASIC-3.36□□□□□ -2.95
CUX1P39880 RNU6-890P-201ENST00000384121 107 ntBASIC-3.36□□□□□ -2.95
CUX1P39880 AC080013.6-201ENST00000606185 215 ntBASIC-3.36□□□□□ -2.95
CUX1P39880 DLEU2_3.2-201ENST00000612883 73 ntBASIC-3.36□□□□□ -2.95
CUX1P39880 MIR548C-201ENST00000384815 97 ntBASIC-3.37□□□□□ -2.95
CUX1P39880 RNA5SP292-201ENST00000390974 118 ntBASIC-3.37□□□□□ -2.95
CUX1P39880 RNU6-587P-201ENST00000391282 106 ntBASIC-3.37□□□□□ -2.95
CUX1P39880 MIR548N-201ENST00000408742 75 ntBASIC-3.37□□□□□ -2.95
CUX1P39880 RNU6-508P-201ENST00000363231 103 ntBASIC-3.38□□□□□ -2.95
CUX1P39880 RNU6-974P-201ENST00000384099 108 ntBASIC-3.38□□□□□ -2.95
CUX1P39880 Y_RNA.507-201ENST00000384500 99 ntBASIC-3.38□□□□□ -2.95
CUX1P39880 RNU6-800P-201ENST00000384473 103 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 SNORD116-6-201ENST00000384711 96 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 SNORA40.4-201ENST00000390971 128 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 MIR548I1-201ENST00000408810 149 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 RNU6-259P-201ENST00000383999 107 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 MIR559-201ENST00000385188 96 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 Y_RNA.606-201ENST00000410579 103 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-3.39□□□□□ -2.95
CUX1P39880 Y_RNA.183-201ENST00000363882 113 ntBASIC-3.4□□□□□ -2.95
CUX1P39880 MIR1254-1-201ENST00000408257 97 ntBASIC-3.4□□□□□ -2.95
CUX1P39880 AC009094.1-201ENST00000564443 426 ntBASIC-3.4□□□□□ -2.95
Retrieved 100 of 98,524 protein–RNA pairs in 201 ms