Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC104996.3-201ENST00000590718 94 ntBASIC-1.76□□□□□ -2.69
LSM1O15116 RNY3P2-201ENST00000362918 102 ntBASIC-1.77□□□□□ -2.69
LSM1O15116 SNORD58C-201ENST00000365223 64 ntBASIC-1.77□□□□□ -2.69
LSM1O15116 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.77□□□□□ -2.69
LSM1O15116 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.77□□□□□ -2.69
LSM1O15116 MIR548A1-201ENST00000385041 97 ntBASIC-1.77□□□□□ -2.69
LSM1O15116 U6.96-201ENST00000636425 70 ntBASIC-1.77□□□□□ -2.69
LSM1O15116 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.78□□□□□ -2.69
LSM1O15116 SNORD4B-201ENST00000459083 72 ntBASIC-1.78□□□□□ -2.69
LSM1O15116 RNU6-706P-201ENST00000517229 104 ntBASIC-1.78□□□□□ -2.69
LSM1O15116 MIR3613-201ENST00000579844 87 ntBASIC-1.78□□□□□ -2.69
LSM1O15116 AL353803.5-201ENST00000599815 141 ntBASIC-1.78□□□□□ -2.69
LSM1O15116 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.79□□□□□ -2.7
LSM1O15116 RNU6-644P-201ENST00000391155 98 ntBASIC-1.79□□□□□ -2.7
LSM1O15116 MIR4679-2-201ENST00000578358 77 ntBASIC-1.79□□□□□ -2.7
LSM1O15116 AL445584.3-201ENST00000617173 78 ntBASIC-1.79□□□□□ -2.7
LSM1O15116 RNU4-32P-201ENST00000363404 141 ntBASIC-1.8□□□□□ -2.7
LSM1O15116 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.8□□□□□ -2.7
LSM1O15116 RNU6-62P-201ENST00000516526 102 ntBASIC-1.8□□□□□ -2.7
LSM1O15116 MIR548X2-201ENST00000579776 100 ntBASIC-1.8□□□□□ -2.7
LSM1O15116 MIR6888-201ENST00000621977 67 ntBASIC-1.8□□□□□ -2.7
LSM1O15116 MIR4320-201ENST00000636981 65 ntBASIC-1.8□□□□□ -2.7
LSM1O15116 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.81□□□□□ -2.7
LSM1O15116 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.82□□□□□ -2.7
LSM1O15116 snoU83B.1-201ENST00000517136 88 ntBASIC-1.82□□□□□ -2.7
LSM1O15116 Y_RNA.193-201ENST00000363979 102 ntBASIC-1.83□□□□□ -2.7
LSM1O15116 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.83□□□□□ -2.7
LSM1O15116 RNU6-394P-201ENST00000410735 107 ntBASIC-1.83□□□□□ -2.7
LSM1O15116 AL035470.1-201ENST00000622571 220 ntBASIC-1.83□□□□□ -2.7
LSM1O15116 SNORA63-201ENST00000363450 132 ntBASIC-1.84□□□□□ -2.7
LSM1O15116 snoU13.17-201ENST00000458802 104 ntBASIC-1.85□□□□□ -2.71
LSM1O15116 AC026421.1-201ENST00000519101 163 ntBASIC-1.85□□□□□ -2.71
LSM1O15116 SNORD116-18-201ENST00000383961 92 ntBASIC-1.86□□□□□ -2.71
LSM1O15116 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.86□□□□□ -2.71
LSM1O15116 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.86□□□□□ -2.71
LSM1O15116 RNA5SP292-201ENST00000390974 118 ntBASIC-1.86□□□□□ -2.71
LSM1O15116 SNORD90-201ENST00000391145 111 ntBASIC-1.86□□□□□ -2.71
LSM1O15116 AC103810.7-201ENST00000607821 91 ntBASIC-1.86□□□□□ -2.71
LSM1O15116 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 SNORD45B-201ENST00000364617 72 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 RNU6-382P-201ENST00000365181 106 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 RNU6-260P-201ENST00000384092 107 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 RNU6-813P-201ENST00000384691 107 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 MIR569-201ENST00000385228 96 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 AL118496.2-201ENST00000448300 230 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 AC006254.2-201ENST00000603259 279 ntBASIC-1.87□□□□□ -2.71
LSM1O15116 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 RNA5SP266-201ENST00000410273 108 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 AC138207.3-201ENST00000585289 166 ntBASIC-1.88□□□□□ -2.71
LSM1O15116 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.89□□□□□ -2.71
LSM1O15116 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.89□□□□□ -2.71
LSM1O15116 MIR4503-201ENST00000582187 83 ntBASIC-1.89□□□□□ -2.71
LSM1O15116 SNORA33.1-201ENST00000364957 130 ntBASIC-1.9□□□□□ -2.71
LSM1O15116 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.9□□□□□ -2.71
LSM1O15116 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.9□□□□□ -2.71
LSM1O15116 MIR548Z-201ENST00000584743 97 ntBASIC-1.9□□□□□ -2.71
LSM1O15116 RNU6-200P-201ENST00000364743 107 ntBASIC-1.91□□□□□ -2.72
LSM1O15116 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.91□□□□□ -2.72
LSM1O15116 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.91□□□□□ -2.72
LSM1O15116 Y_RNA.604-201ENST00000410574 102 ntBASIC-1.91□□□□□ -2.72
LSM1O15116 RNA5SP461-201ENST00000516451 104 ntBASIC-1.91□□□□□ -2.72
LSM1O15116 SNORA18.5-201ENST00000516616 101 ntBASIC-1.91□□□□□ -2.72
LSM1O15116 SNORA2.1-201ENST00000363089 137 ntBASIC-1.92□□□□□ -2.72
LSM1O15116 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.92□□□□□ -2.72
LSM1O15116 MTATP6P29-201ENST00000415057 132 ntBASIC-1.92□□□□□ -2.72
LSM1O15116 RNU6-824P-201ENST00000363724 104 ntBASIC-1.93□□□□□ -2.72
LSM1O15116 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.93□□□□□ -2.72
LSM1O15116 MIR29B1-201ENST00000385015 81 ntBASIC-1.93□□□□□ -2.72
LSM1O15116 MIR1255B2-201ENST00000408618 67 ntBASIC-1.93□□□□□ -2.72
LSM1O15116 RNU6-519P-201ENST00000410590 108 ntBASIC-1.93□□□□□ -2.72
LSM1O15116 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.93□□□□□ -2.72
LSM1O15116 Y_RNA.489-201ENST00000384410 101 ntBASIC-1.94□□□□□ -2.72
LSM1O15116 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.94□□□□□ -2.72
LSM1O15116 MIR4777-201ENST00000583710 86 ntBASIC-1.94□□□□□ -2.72
LSM1O15116 MIR3657-201ENST00000584818 117 ntBASIC-1.94□□□□□ -2.72
LSM1O15116 RNU6-924P-201ENST00000362926 108 ntBASIC-1.95□□□□□ -2.72
LSM1O15116 HLA-S-202ENST00000425174 53 ntBASIC-1.95□□□□□ -2.72
LSM1O15116 MTND3P2-201ENST00000438452 342 ntBASIC-1.95□□□□□ -2.72
LSM1O15116 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.95□□□□□ -2.72
LSM1O15116 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 SNORA26.4-201ENST00000391188 123 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 MIR548I1-201ENST00000408810 149 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 RNU6-772P-201ENST00000516042 105 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 RNU6-327P-201ENST00000516270 127 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 CYP3A54P-201ENST00000566950 75 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 MIR5009-201ENST00000578736 100 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 MIR3144-201ENST00000579460 79 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.96□□□□□ -2.72
LSM1O15116 SNORD115-33-201ENST00000363723 82 ntBASIC-1.97□□□□□ -2.72
LSM1O15116 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.97□□□□□ -2.72
LSM1O15116 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.97□□□□□ -2.72
LSM1O15116 RNU6-479P-201ENST00000516348 105 ntBASIC-1.97□□□□□ -2.72
LSM1O15116 RNA5SP147-201ENST00000516493 109 ntBASIC-1.97□□□□□ -2.72
LSM1O15116 MIR6509-201ENST00000614603 85 ntBASIC-1.97□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 243.3 ms