Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RNU4-63P-201ENST00000411313 118 ntBASIC-0.83□□□□□ -2.54
SKA1Q96BD8 AL590491.3-201ENST00000610731 82 ntBASIC-0.83□□□□□ -2.54
SKA1Q96BD8 RNU6-832P-201ENST00000363319 107 ntBASIC-0.84□□□□□ -2.54
SKA1Q96BD8 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.84□□□□□ -2.54
SKA1Q96BD8 U3.27-201ENST00000391237 200 ntBASIC-0.84□□□□□ -2.54
SKA1Q96BD8 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.84□□□□□ -2.54
SKA1Q96BD8 RNU6-65P-201ENST00000516332 98 ntBASIC-0.84□□□□□ -2.54
SKA1Q96BD8 AL391099.1-201ENST00000624635 187 ntBASIC-0.84□□□□□ -2.54
SKA1Q96BD8 RNY3P2-201ENST00000362918 102 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 MIR451A-201ENST00000385059 72 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 SNORD2-201ENST00000459163 69 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 RNA5SP66-201ENST00000517178 101 ntBASIC-0.85□□□□□ -2.55
SKA1Q96BD8 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.86□□□□□ -2.55
SKA1Q96BD8 MIR4536-1-201ENST00000583537 88 ntBASIC-0.86□□□□□ -2.55
SKA1Q96BD8 MIR4439-201ENST00000583746 80 ntBASIC-0.86□□□□□ -2.55
SKA1Q96BD8 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.86□□□□□ -2.55
SKA1Q96BD8 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.86□□□□□ -2.55
SKA1Q96BD8 SNORD114-4-201ENST00000363962 75 ntBASIC-0.87□□□□□ -2.55
SKA1Q96BD8 RNU6-257P-201ENST00000410238 98 ntBASIC-0.87□□□□□ -2.55
SKA1Q96BD8 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.87□□□□□ -2.55
SKA1Q96BD8 RNU6-86P-201ENST00000606534 107 ntBASIC-0.87□□□□□ -2.55
SKA1Q96BD8 AC025521.1-201ENST00000621624 286 ntBASIC-0.87□□□□□ -2.55
SKA1Q96BD8 AL035470.1-201ENST00000622571 220 ntBASIC-0.87□□□□□ -2.55
SKA1Q96BD8 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.88□□□□□ -2.55
SKA1Q96BD8 AC114755.3-201ENST00000481111 251 ntBASIC-0.88□□□□□ -2.55
SKA1Q96BD8 AC068339.1-201ENST00000526965 141 ntBASIC-0.88□□□□□ -2.55
SKA1Q96BD8 AP000676.1-201ENST00000533307 52 ntBASIC-0.88□□□□□ -2.55
SKA1Q96BD8 MIR548AX-201ENST00000580117 73 ntBASIC-0.88□□□□□ -2.55
SKA1Q96BD8 SNORD114-11-201ENST00000363738 75 ntBASIC-0.89□□□□□ -2.55
SKA1Q96BD8 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.89□□□□□ -2.55
SKA1Q96BD8 MIR4432-201ENST00000581823 84 ntBASIC-0.89□□□□□ -2.55
SKA1Q96BD8 SNORD45B-201ENST00000364617 72 ntBASIC-0.9□□□□□ -2.55
SKA1Q96BD8 RNU6-75P-201ENST00000515944 104 ntBASIC-0.9□□□□□ -2.55
SKA1Q96BD8 AC090425.1-201ENST00000610007 140 ntBASIC-0.9□□□□□ -2.55
SKA1Q96BD8 SNORD50.2-201ENST00000365465 70 ntBASIC-0.91□□□□□ -2.56
SKA1Q96BD8 RNY1P5-201ENST00000383890 115 ntBASIC-0.91□□□□□ -2.56
SKA1Q96BD8 RNU6-900P-201ENST00000384498 102 ntBASIC-0.91□□□□□ -2.56
SKA1Q96BD8 MIR3681-201ENST00000580089 72 ntBASIC-0.91□□□□□ -2.56
SKA1Q96BD8 MIR9-2-201ENST00000384838 87 ntBASIC-0.92□□□□□ -2.56
SKA1Q96BD8 MT-TQ-201ENST00000387372 72 ntBASIC-0.92□□□□□ -2.56
SKA1Q96BD8 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.92□□□□□ -2.56
SKA1Q96BD8 MIR409-201ENST00000362237 79 ntBASIC-0.93□□□□□ -2.56
SKA1Q96BD8 RNU6-901P-201ENST00000384593 106 ntBASIC-0.93□□□□□ -2.56
SKA1Q96BD8 RNU7-107P-201ENST00000459121 61 ntBASIC-0.93□□□□□ -2.56
SKA1Q96BD8 AC093726.3-201ENST00000637588 150 ntBASIC-0.93□□□□□ -2.56
SKA1Q96BD8 SNORD115-25-201ENST00000362619 82 ntBASIC-0.94□□□□□ -2.56
SKA1Q96BD8 SNORD114-14-201ENST00000362723 75 ntBASIC-0.94□□□□□ -2.56
SKA1Q96BD8 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.94□□□□□ -2.56
SKA1Q96BD8 RNU6-794P-201ENST00000517261 64 ntBASIC-0.94□□□□□ -2.56
SKA1Q96BD8 AL513043.2-201ENST00000573941 143 ntBASIC-0.94□□□□□ -2.56
SKA1Q96BD8 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 RNU6-54P-201ENST00000365563 107 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 RNU6-971P-201ENST00000516920 106 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 RNU6-762P-201ENST00000517107 102 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 MIR5009-201ENST00000578736 100 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 MIR4436A-201ENST00000585278 85 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 U6.95-201ENST00000636931 70 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 MIR3914-2-201ENST00000637339 95 ntBASIC-0.95□□□□□ -2.56
SKA1Q96BD8 RNU6-80P-201ENST00000384195 107 ntBASIC-0.97□□□□□ -2.56
SKA1Q96BD8 MIR548U-201ENST00000390728 81 ntBASIC-0.97□□□□□ -2.56
SKA1Q96BD8 SNORD57-201ENST00000448188 72 ntBASIC-0.97□□□□□ -2.56
SKA1Q96BD8 RNU6-346P-201ENST00000516288 111 ntBASIC-0.97□□□□□ -2.56
SKA1Q96BD8 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.97□□□□□ -2.56
SKA1Q96BD8 SNORA40.17-201ENST00000517256 115 ntBASIC-0.97□□□□□ -2.56
SKA1Q96BD8 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.98□□□□□ -2.57
SKA1Q96BD8 MIR548A1-201ENST00000385041 97 ntBASIC-0.98□□□□□ -2.57
SKA1Q96BD8 MIR548A3-201ENST00000385297 97 ntBASIC-0.98□□□□□ -2.57
SKA1Q96BD8 RNU6-644P-201ENST00000391155 98 ntBASIC-0.98□□□□□ -2.57
SKA1Q96BD8 FGF7P7-201ENST00000514120 227 ntBASIC-0.98□□□□□ -2.57
SKA1Q96BD8 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.99□□□□□ -2.57
SKA1Q96BD8 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.99□□□□□ -2.57
SKA1Q96BD8 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.99□□□□□ -2.57
SKA1Q96BD8 RNU6-813P-201ENST00000384691 107 ntBASIC-0.99□□□□□ -2.57
SKA1Q96BD8 RNU4-36P-201ENST00000364294 144 ntBASIC-1□□□□□ -2.57
SKA1Q96BD8 Y_RNA.353-201ENST00000365440 108 ntBASIC-1□□□□□ -2.57
SKA1Q96BD8 Y_RNA.586-201ENST00000391146 98 ntBASIC-1□□□□□ -2.57
SKA1Q96BD8 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1□□□□□ -2.57
SKA1Q96BD8 RNU6-255P-201ENST00000516957 105 ntBASIC-1□□□□□ -2.57
SKA1Q96BD8 AL445193.1-201ENST00000441183 141 ntBASIC-1.01□□□□□ -2.57
SKA1Q96BD8 RNU7-85P-201ENST00000458851 63 ntBASIC-1.01□□□□□ -2.57
SKA1Q96BD8 MIR3613-201ENST00000579844 87 ntBASIC-1.01□□□□□ -2.57
SKA1Q96BD8 RNA5SP331-201ENST00000364986 107 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 SNORA49-201ENST00000386157 136 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 RNA5SP266-201ENST00000410273 108 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 RNU6-719P-201ENST00000516671 104 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 RNY1P9-201ENST00000532431 109 ntBASIC-1.02□□□□□ -2.57
SKA1Q96BD8 MIR204-201ENST00000385200 110 ntBASIC-1.03□□□□□ -2.57
SKA1Q96BD8 SNORD33.1-201ENST00000516213 88 ntBASIC-1.03□□□□□ -2.57
SKA1Q96BD8 AC103810.7-201ENST00000607821 91 ntBASIC-1.03□□□□□ -2.57
SKA1Q96BD8 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.04□□□□□ -2.58
SKA1Q96BD8 RNU7-55P-201ENST00000459426 62 ntBASIC-1.04□□□□□ -2.58
SKA1Q96BD8 RNU6-907P-201ENST00000390924 102 ntBASIC-1.05□□□□□ -2.58
SKA1Q96BD8 MIR548E-201ENST00000408287 88 ntBASIC-1.05□□□□□ -2.58
SKA1Q96BD8 SNORA63.2-201ENST00000362603 126 ntBASIC-1.06□□□□□ -2.58
SKA1Q96BD8 snoU13.13-201ENST00000458842 104 ntBASIC-1.06□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 267.2 ms