Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR6734-201ENST00000621166 68 ntBASIC1.72□□□□□ -2.13
COL8A1P27658 RNU6-42P-201ENST00000384165 107 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 RNU6-930P-201ENST00000390938 100 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 SNORD41.1-201ENST00000391000 69 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 RNU6-994P-201ENST00000410507 111 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 RNU1-40P-201ENST00000516816 164 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 RNU1-97P-201ENST00000516872 164 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 AL512310.8-201ENST00000550183 120 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.71□□□□□ -2.14
COL8A1P27658 MIR6504-201ENST00000613520 61 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 AC084768.2-201ENST00000622736 221 ntBASIC1.71□□□□□ -2.14
COL8A1P27658 MIR100-201ENST00000385259 80 ntBASIC1.7□□□□□ -2.14
COL8A1P27658 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
COL8A1P27658 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.7□□□□□ -2.14
COL8A1P27658 AL591704.2-201ENST00000421658 181 ntBASIC1.7□□□□□ -2.14
COL8A1P27658 SNORA31.2-201ENST00000516019 134 ntBASIC1.7□□□□□ -2.14
COL8A1P27658 RNU6-135P-201ENST00000516769 101 ntBASIC1.7□□□□□ -2.14
COL8A1P27658 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL8A1P27658 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL8A1P27658 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
COL8A1P27658 RNU4-33P-201ENST00000364316 85 ntBASIC1.69□□□□□ -2.14
COL8A1P27658 SNORA15B-2-201ENST00000384058 135 ntBASIC1.69□□□□□ -2.14
COL8A1P27658 SNORA15B-1-201ENST00000384334 135 ntBASIC1.69□□□□□ -2.14
COL8A1P27658 RNU7-95P-201ENST00000459222 64 ntBASIC1.69□□□□□ -2.14
COL8A1P27658 RNU7-21P-201ENST00000459430 62 ntBASIC1.69□□□□□ -2.14
COL8A1P27658 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL8A1P27658 MIR1-1-201ENST00000362147 71 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 Y_RNA.327-201ENST00000365201 102 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 Y_RNA.363-201ENST00000365529 113 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 SNORA48.3-201ENST00000391081 134 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 RNU6-717P-201ENST00000459076 104 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 MIR4448-201ENST00000584360 86 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 AL136317.1-201ENST00000612653 226 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 RMST_2.1-201ENST00000617263 136 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 MIR6779-201ENST00000617283 64 ntBASIC1.68□□□□□ -2.14
COL8A1P27658 MIR520F-201ENST00000384824 87 ntBASIC1.67□□□□□ -2.14
COL8A1P27658 snoU13.13-201ENST00000458842 104 ntBASIC1.67□□□□□ -2.14
COL8A1P27658 RNU6-231P-201ENST00000517122 103 ntBASIC1.67□□□□□ -2.14
COL8A1P27658 AP000553.5-201ENST00000641933 54 ntBASIC1.67□□□□□ -2.14
COL8A1P27658 SNORA41B-201ENST00000384785 128 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 MIR9-3-201ENST00000385084 90 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 Y_RNA.633-201ENST00000459107 95 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 RNU7-90P-201ENST00000459216 62 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 RNA5SP364-201ENST00000516938 78 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 MIR4452-201ENST00000583004 71 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 MIR4639-201ENST00000584938 69 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 7SK.11-201ENST00000615477 250 ntBASIC1.66□□□□□ -2.14
COL8A1P27658 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.66□□□□□ -2.14
COL8A1P27658 Y_RNA.125-201ENST00000363371 111 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 RNU1-141P-201ENST00000364623 158 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 SNORA80D-201ENST00000384488 135 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 MIR30A-201ENST00000385092 71 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 SNORA44.1-201ENST00000517031 108 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 AL096840.1-201ENST00000603287 93 ntBASIC1.65□□□□□ -2.15
COL8A1P27658 SNORA7.1-201ENST00000363750 139 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 Y_RNA.246-201ENST00000364495 108 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 SNORA33.1-201ENST00000364957 130 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 SNORD28-201ENST00000384706 75 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
COL8A1P27658 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.64□□□□□ -2.15
COL8A1P27658 MIR548F3-201ENST00000408509 87 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 RNA5SP220-201ENST00000516298 104 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 RN7SKP88-201ENST00000516847 250 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 MIR4287-201ENST00000579398 78 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 7SK.8-201ENST00000612110 250 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 AC244669.1-204ENST00000621564 178 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 7SK.13-201ENST00000622040 250 ntBASIC1.64□□□□□ -2.15
COL8A1P27658 MIR934-201ENST00000401241 83 ntBASIC1.63□□□□□ -2.15
COL8A1P27658 MIR548L-201ENST00000408303 86 ntBASIC1.63□□□□□ -2.15
COL8A1P27658 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.63□□□□□ -2.15
COL8A1P27658 MIR4299-201ENST00000577899 72 ntBASIC1.63□□□□□ -2.15
COL8A1P27658 uc_338.20-201ENST00000621563 178 ntBASIC1.63□□□□□ -2.15
COL8A1P27658 MIR758-201ENST00000390227 88 ntBASIC1.62□□□□□ -2.15
COL8A1P27658 MIR1827-201ENST00000408549 66 ntBASIC1.62□□□□□ -2.15
COL8A1P27658 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.62□□□□□ -2.15
COL8A1P27658 AC002350.1-201ENST00000490759 375 ntBASIC1.62□□□□□ -2.15
COL8A1P27658 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL8A1P27658 RNU6-726P-201ENST00000364680 107 ntBASIC1.61□□□□□ -2.15
COL8A1P27658 Y_RNA.325-201ENST00000365171 122 ntBASIC1.61□□□□□ -2.15
COL8A1P27658 MIR644A-201ENST00000385262 94 ntBASIC1.61□□□□□ -2.15
COL8A1P27658 RNU5B-6P-201ENST00000516765 68 ntBASIC1.61□□□□□ -2.15
COL8A1P27658 MIR548X-201ENST00000580069 75 ntBASIC1.61□□□□□ -2.15
COL8A1P27658 MIR5002-201ENST00000584713 97 ntBASIC1.61□□□□□ -2.15
COL8A1P27658 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.61□□□□□ -2.15
COL8A1P27658 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
COL8A1P27658 RNA5SP160-201ENST00000364866 120 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 MIR676-201ENST00000390702 67 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 SNORA67.5-201ENST00000391036 107 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 RNA5SP338-201ENST00000410495 85 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 RNU6-469P-201ENST00000516253 101 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 SNORA40.16-201ENST00000517238 121 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.6□□□□□ -2.15
COL8A1P27658 SNORD114-26-201ENST00000363543 72 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 SNORA63.6-201ENST00000364921 119 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 RNU6-392P-201ENST00000364926 101 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 SNORD114-22-201ENST00000365423 72 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 Y_RNA.374-201ENST00000365606 101 ntBASIC1.59□□□□□ -2.15
COL8A1P27658 SNORA8.2-201ENST00000384372 139 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 261.9 ms