Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.03□□□□□ -2.57
CCDC43Q96MW1 RNU6-363P-201ENST00000362895 105 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 SNORD101-201ENST00000384027 73 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 RNU6-901P-201ENST00000384593 106 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 SNORD56B-201ENST00000384713 71 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 AP002392.1-201ENST00000537692 208 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 MIR4696-201ENST00000581431 70 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 MIR4436A-201ENST00000585278 85 ntBASIC-1.04□□□□□ -2.58
CCDC43Q96MW1 MIR409-201ENST00000362237 79 ntBASIC-1.05□□□□□ -2.58
CCDC43Q96MW1 RNU6-151P-201ENST00000364158 107 ntBASIC-1.05□□□□□ -2.58
CCDC43Q96MW1 MIR548D2-201ENST00000384955 97 ntBASIC-1.05□□□□□ -2.58
CCDC43Q96MW1 AL353813.1-201ENST00000440700 253 ntBASIC-1.05□□□□□ -2.58
CCDC43Q96MW1 RNU6-861P-201ENST00000516745 106 ntBASIC-1.05□□□□□ -2.58
CCDC43Q96MW1 MIR4503-201ENST00000582187 83 ntBASIC-1.05□□□□□ -2.58
CCDC43Q96MW1 RNU6-664P-201ENST00000362381 107 ntBASIC-1.06□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.06□□□□□ -2.58
CCDC43Q96MW1 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.06□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.06□□□□□ -2.58
CCDC43Q96MW1 RNA5SP136-201ENST00000410906 107 ntBASIC-1.06□□□□□ -2.58
CCDC43Q96MW1 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.06□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.193-201ENST00000363979 102 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 RNY1P7-201ENST00000384743 110 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 SNORA49-201ENST00000386157 136 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 RNU6-466P-201ENST00000391224 103 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 MIR4280-201ENST00000582178 76 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 AC145423.2-201ENST00000610631 239 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 MIR548O2-201ENST00000616090 70 ntBASIC-1.07□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.08□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.08□□□□□ -2.58
CCDC43Q96MW1 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.08□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.08□□□□□ -2.58
CCDC43Q96MW1 RNU6-647P-201ENST00000364243 107 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 RNU6-409P-201ENST00000384114 104 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 RNU6-574P-201ENST00000384265 107 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 MIR204-201ENST00000385200 110 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 MIR216B-201ENST00000390186 82 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 RNU6-762P-201ENST00000517107 102 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.09□□□□□ -2.58
CCDC43Q96MW1 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.1□□□□□ -2.59
CCDC43Q96MW1 RNA5SP266-201ENST00000410273 108 ntBASIC-1.1□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.1□□□□□ -2.59
CCDC43Q96MW1 RNU7-55P-201ENST00000459426 62 ntBASIC-1.1□□□□□ -2.59
CCDC43Q96MW1 AL627230.5-201ENST00000619807 58 ntBASIC-1.1□□□□□ -2.59
CCDC43Q96MW1 SNORD115-25-201ENST00000362619 82 ntBASIC-1.11□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.11□□□□□ -2.59
CCDC43Q96MW1 RNU6-196P-201ENST00000384315 107 ntBASIC-1.11□□□□□ -2.59
CCDC43Q96MW1 snoU13.13-201ENST00000458842 104 ntBASIC-1.11□□□□□ -2.59
CCDC43Q96MW1 MIR6851-201ENST00000617060 67 ntBASIC-1.11□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.11□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.371-201ENST00000365591 113 ntBASIC-1.12□□□□□ -2.59
CCDC43Q96MW1 MIR196A1-201ENST00000388006 70 ntBASIC-1.12□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.12□□□□□ -2.59
CCDC43Q96MW1 AC021146.6-201ENST00000514659 117 ntBASIC-1.12□□□□□ -2.59
CCDC43Q96MW1 RNU6-1045P-201ENST00000516321 107 ntBASIC-1.12□□□□□ -2.59
CCDC43Q96MW1 RNU6-235P-201ENST00000362644 107 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 RNU6-682P-201ENST00000363843 106 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 MIR513C-201ENST00000401352 84 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 RNU6-781P-201ENST00000516377 101 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 SNORD38.3-201ENST00000516599 73 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 AL442128.1-201ENST00000615151 90 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 MIR6738-201ENST00000619620 64 ntBASIC-1.13□□□□□ -2.59
CCDC43Q96MW1 RNU4-32P-201ENST00000363404 141 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 RNU6-54P-201ENST00000365563 107 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 MIR587-201ENST00000384845 96 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 RNU6-935P-201ENST00000410371 100 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 SNORA40.17-201ENST00000517256 115 ntBASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.14□□□□□ -2.59
CCDC43Q96MW1 Y_RNA.489-201ENST00000384410 101 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 MTND3P2-201ENST00000438452 342 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 SNORA13-201ENST00000458790 133 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 RNU7-120P-201ENST00000459334 63 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 SNORA81.3-201ENST00000517283 198 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 MIR4324-201ENST00000584846 72 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 RNU6-86P-201ENST00000606534 107 ntBASIC-1.15□□□□□ -2.59
CCDC43Q96MW1 MIR582-201ENST00000365731 98 ntBASIC-1.16□□□□□ -2.6
CCDC43Q96MW1 RNU6-10P-201ENST00000384036 107 ntBASIC-1.16□□□□□ -2.6
CCDC43Q96MW1 AP001340.1-201ENST00000624405 217 ntBASIC-1.16□□□□□ -2.6
CCDC43Q96MW1 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.17□□□□□ -2.6
CCDC43Q96MW1 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.17□□□□□ -2.6
CCDC43Q96MW1 MIR451A-201ENST00000385059 72 ntBASIC-1.17□□□□□ -2.6
CCDC43Q96MW1 RNU6-816P-201ENST00000390914 107 ntBASIC-1.17□□□□□ -2.6
CCDC43Q96MW1 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.17□□□□□ -2.6
CCDC43Q96MW1 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.17□□□□□ -2.6
CCDC43Q96MW1 AL158147.1-201ENST00000443970 75 ntBASIC-1.17□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 232.2 ms