Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MIR3646-201ENST00000578301 84 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 MIR1255B1-201ENST00000636325 63 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.77□□□□□ -2.69
LIMS3P0CW19 Y_RNA.277-201ENST00000364754 102 ntBASIC-1.77□□□□□ -2.69
LIMS3P0CW19 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.77□□□□□ -2.69
LIMS3P0CW19 AC026421.1-201ENST00000519101 163 ntBASIC-1.77□□□□□ -2.69
LIMS3P0CW19 AC108081.1-201ENST00000604358 221 ntBASIC-1.77□□□□□ -2.69
LIMS3P0CW19 AC021753.1-201ENST00000635724 168 ntBASIC-1.77□□□□□ -2.69
LIMS3P0CW19 MT-TD-201ENST00000387419 68 ntBASIC-1.78□□□□□ -2.69
LIMS3P0CW19 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.78□□□□□ -2.69
LIMS3P0CW19 AC132825.6-201ENST00000638861 357 ntBASIC-1.78□□□□□ -2.69
LIMS3P0CW19 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.79□□□□□ -2.7
LIMS3P0CW19 SNORD114-17-201ENST00000364699 75 ntBASIC-1.79□□□□□ -2.7
LIMS3P0CW19 MIR124-2-201ENST00000385081 109 ntBASIC-1.79□□□□□ -2.7
LIMS3P0CW19 RNU6-337P-201ENST00000391243 106 ntBASIC-1.79□□□□□ -2.7
LIMS3P0CW19 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.8□□□□□ -2.7
LIMS3P0CW19 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.8□□□□□ -2.7
LIMS3P0CW19 MIR1302-6-201ENST00000408466 90 ntBASIC-1.8□□□□□ -2.7
LIMS3P0CW19 MTND5P20-201ENST00000448677 143 ntBASIC-1.8□□□□□ -2.7
LIMS3P0CW19 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.8□□□□□ -2.7
LIMS3P0CW19 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.81□□□□□ -2.7
LIMS3P0CW19 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.81□□□□□ -2.7
LIMS3P0CW19 MT-TI-201ENST00000387365 69 ntBASIC-1.81□□□□□ -2.7
LIMS3P0CW19 MIR759-201ENST00000390224 91 ntBASIC-1.81□□□□□ -2.7
LIMS3P0CW19 RNU6-479P-201ENST00000516348 105 ntBASIC-1.81□□□□□ -2.7
LIMS3P0CW19 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.81□□□□□ -2.7
LIMS3P0CW19 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.82□□□□□ -2.7
LIMS3P0CW19 SNX3P1X-201ENST00000414887 175 ntBASIC-1.82□□□□□ -2.7
LIMS3P0CW19 RNA5SP180-201ENST00000516181 101 ntBASIC-1.82□□□□□ -2.7
LIMS3P0CW19 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.83□□□□□ -2.7
LIMS3P0CW19 Y_RNA.483-201ENST00000384380 101 ntBASIC-1.83□□□□□ -2.7
LIMS3P0CW19 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.83□□□□□ -2.7
LIMS3P0CW19 Y_RNA.686-201ENST00000516548 134 ntBASIC-1.83□□□□□ -2.7
LIMS3P0CW19 Y_RNA.702-201ENST00000516843 96 ntBASIC-1.83□□□□□ -2.7
LIMS3P0CW19 YWHAEP3-201ENST00000582767 121 ntBASIC-1.83□□□□□ -2.7
LIMS3P0CW19 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.84□□□□□ -2.7
LIMS3P0CW19 MT-TW-201ENST00000387382 68 ntBASIC-1.84□□□□□ -2.7
LIMS3P0CW19 RNU6-985P-201ENST00000410182 104 ntBASIC-1.84□□□□□ -2.7
LIMS3P0CW19 AC134503.1-201ENST00000633048 54 ntBASIC-1.84□□□□□ -2.7
LIMS3P0CW19 MIR198-201ENST00000637333 62 ntBASIC-1.84□□□□□ -2.7
LIMS3P0CW19 RNU6-363P-201ENST00000362895 105 ntBASIC-1.85□□□□□ -2.71
LIMS3P0CW19 RNU6-647P-201ENST00000364243 107 ntBASIC-1.85□□□□□ -2.71
LIMS3P0CW19 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.85□□□□□ -2.71
LIMS3P0CW19 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.85□□□□□ -2.71
LIMS3P0CW19 HLA-S-202ENST00000425174 53 ntBASIC-1.85□□□□□ -2.71
LIMS3P0CW19 RNU6-208P-201ENST00000362431 107 ntBASIC-1.86□□□□□ -2.71
LIMS3P0CW19 Y_RNA.626-201ENST00000411288 95 ntBASIC-1.86□□□□□ -2.71
LIMS3P0CW19 AC022028.1-201ENST00000412054 408 ntBASIC-1.86□□□□□ -2.71
LIMS3P0CW19 RNU6-75P-201ENST00000515944 104 ntBASIC-1.86□□□□□ -2.71
LIMS3P0CW19 MIR8062-201ENST00000621515 85 ntBASIC-1.86□□□□□ -2.71
LIMS3P0CW19 RNU6-312P-201ENST00000364629 107 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 Y_RNA.512-201ENST00000384518 102 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 MIR548P-201ENST00000408336 84 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 FGF7P7-201ENST00000514120 227 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 RNU6-719P-201ENST00000516671 104 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 RNU6-1137P-201ENST00000517073 99 ntBASIC-1.87□□□□□ -2.71
LIMS3P0CW19 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.88□□□□□ -2.71
LIMS3P0CW19 Y_RNA.198-201ENST00000364013 98 ntBASIC-1.88□□□□□ -2.71
LIMS3P0CW19 RNU7-134P-201ENST00000458997 64 ntBASIC-1.88□□□□□ -2.71
LIMS3P0CW19 RNU6-65P-201ENST00000516332 98 ntBASIC-1.88□□□□□ -2.71
LIMS3P0CW19 MTND4P29-201ENST00000503122 1372 ntBASIC-1.88□□□□□ -2.71
LIMS3P0CW19 RNU6-409P-201ENST00000384114 104 ntBASIC-1.89□□□□□ -2.71
LIMS3P0CW19 MIR601-201ENST00000385256 79 ntBASIC-1.89□□□□□ -2.71
LIMS3P0CW19 SNORD37.2-201ENST00000391075 66 ntBASIC-1.89□□□□□ -2.71
LIMS3P0CW19 MIR548H3-201ENST00000408771 118 ntBASIC-1.89□□□□□ -2.71
LIMS3P0CW19 AL160413.1-201ENST00000622780 310 ntBASIC-1.89□□□□□ -2.71
LIMS3P0CW19 U6.96-201ENST00000636425 70 ntBASIC-1.89□□□□□ -2.71
LIMS3P0CW19 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.9□□□□□ -2.71
LIMS3P0CW19 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.9□□□□□ -2.71
LIMS3P0CW19 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.9□□□□□ -2.71
LIMS3P0CW19 AL442128.1-201ENST00000615151 90 ntBASIC-1.9□□□□□ -2.71
LIMS3P0CW19 Y_RNA.804-201ENST00000615262 101 ntBASIC-1.9□□□□□ -2.71
LIMS3P0CW19 RNU6-495P-201ENST00000362995 107 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 RNY1P11-201ENST00000363759 113 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 Y_RNA.435-201ENST00000384095 112 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 MIR548D2-201ENST00000384955 97 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 MIR8485-201ENST00000401372 91 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 MIR1285-2-201ENST00000408311 88 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 AC021146.9-201ENST00000512503 156 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 MIR4536-1-201ENST00000583537 88 ntBASIC-1.91□□□□□ -2.72
LIMS3P0CW19 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.91□□□□□ -2.72
LIMS3P0CW19 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.92□□□□□ -2.72
LIMS3P0CW19 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.92□□□□□ -2.72
LIMS3P0CW19 SNORD127-201ENST00000458892 86 ntBASIC-1.92□□□□□ -2.72
LIMS3P0CW19 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.92□□□□□ -2.72
LIMS3P0CW19 MIR5591-201ENST00000578248 65 ntBASIC-1.92□□□□□ -2.72
LIMS3P0CW19 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 RNA5SP331-201ENST00000364986 107 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 Y_RNA.488-201ENST00000384403 102 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 RNU6-635P-201ENST00000516651 102 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 MIR3171-201ENST00000584270 74 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 AL353803.5-201ENST00000599815 141 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.93□□□□□ -2.72
LIMS3P0CW19 SNORA63.2-201ENST00000362603 126 ntBASIC-1.94□□□□□ -2.72
LIMS3P0CW19 Y_RNA.216-201ENST00000364205 93 ntBASIC-1.94□□□□□ -2.72
LIMS3P0CW19 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.94□□□□□ -2.72
LIMS3P0CW19 RNU6-918P-201ENST00000391219 106 ntBASIC-1.94□□□□□ -2.72
LIMS3P0CW19 RNA5SP136-201ENST00000410906 107 ntBASIC-1.94□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 338.3 ms