Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-42P-201ENST00000384165 107 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 RNU6-110P-201ENST00000384508 104 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 RNU6-243P-201ENST00000391140 107 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 RNU7-195P-201ENST00000458793 62 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 Y_RNA.809-201ENST00000516058 95 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 AC011195.1-201ENST00000578177 177 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.87□□□□□ -2.27
VPS53Q5VIR6 MALAT1.1-201ENST00000618249 95 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 AC025521.1-201ENST00000621624 286 ntBASIC0.87□□□□□ -2.27
VPS53Q5VIR6 MIR599-201ENST00000385069 95 ntBASIC0.86□□□□□ -2.27
VPS53Q5VIR6 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.86□□□□□ -2.27
VPS53Q5VIR6 MIR6835-201ENST00000621552 64 ntBASIC0.86□□□□□ -2.27
VPS53Q5VIR6 Y_RNA.290-201ENST00000364879 114 ntBASIC0.85□□□□□ -2.27
VPS53Q5VIR6 MIR518E-201ENST00000385252 88 ntBASIC0.85□□□□□ -2.27
VPS53Q5VIR6 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
VPS53Q5VIR6 RNU6-469P-201ENST00000516253 101 ntBASIC0.85□□□□□ -2.27
VPS53Q5VIR6 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
VPS53Q5VIR6 MIR488-201ENST00000365739 83 ntBASIC0.84□□□□□ -2.27
VPS53Q5VIR6 MIR508-201ENST00000384857 115 ntBASIC0.84□□□□□ -2.27
VPS53Q5VIR6 Y_RNA.648-201ENST00000459455 110 ntBASIC0.84□□□□□ -2.27
VPS53Q5VIR6 MIR18A-201ENST00000362310 71 ntBASIC0.83□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.220-201ENST00000364244 109 ntBASIC0.83□□□□□ -2.28
VPS53Q5VIR6 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.83□□□□□ -2.28
VPS53Q5VIR6 RNU6-1223P-201ENST00000517124 104 ntBASIC0.83□□□□□ -2.28
VPS53Q5VIR6 MIR4714-201ENST00000580728 77 ntBASIC0.83□□□□□ -2.28
VPS53Q5VIR6 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
VPS53Q5VIR6 RNU6-1298P-201ENST00000362456 101 ntBASIC0.82□□□□□ -2.28
VPS53Q5VIR6 RNU6-162P-201ENST00000516228 103 ntBASIC0.82□□□□□ -2.28
VPS53Q5VIR6 MIR3678-201ENST00000578455 94 ntBASIC0.82□□□□□ -2.28
VPS53Q5VIR6 MIR4639-201ENST00000584938 69 ntBASIC0.82□□□□□ -2.28
VPS53Q5VIR6 AL590095.2-201ENST00000604136 117 ntBASIC0.82□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.118-201ENST00000363300 101 ntBASIC0.81□□□□□ -2.28
VPS53Q5VIR6 MIR644A-201ENST00000385262 94 ntBASIC0.81□□□□□ -2.28
VPS53Q5VIR6 AL606490.4-201ENST00000423117 127 ntBASIC0.81□□□□□ -2.28
VPS53Q5VIR6 RNA5SP170-201ENST00000517150 101 ntBASIC0.81□□□□□ -2.28
VPS53Q5VIR6 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.81□□□□□ -2.28
VPS53Q5VIR6 SNORD115-24-201ENST00000363528 82 ntBASIC0.8□□□□□ -2.28
VPS53Q5VIR6 SNORD18A-201ENST00000363753 72 ntBASIC0.8□□□□□ -2.28
VPS53Q5VIR6 RNU6-524P-201ENST00000384270 107 ntBASIC0.8□□□□□ -2.28
VPS53Q5VIR6 RNU6-466P-201ENST00000391224 103 ntBASIC0.8□□□□□ -2.28
VPS53Q5VIR6 RNU6-1265P-201ENST00000516342 103 ntBASIC0.8□□□□□ -2.28
VPS53Q5VIR6 RNA5SP403-201ENST00000363598 108 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 RNU6-1229P-201ENST00000364295 107 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.283-201ENST00000364798 112 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.508-201ENST00000384502 114 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 SNORD28-201ENST00000384706 75 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 RNY4P30-201ENST00000410216 95 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 snoU13.11-201ENST00000459219 104 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 MIR5000-201ENST00000577717 103 ntBASIC0.79□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.190-201ENST00000363964 101 ntBASIC0.78□□□□□ -2.28
VPS53Q5VIR6 RNU6-1131P-201ENST00000364955 107 ntBASIC0.78□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.355-201ENST00000365462 98 ntBASIC0.78□□□□□ -2.28
VPS53Q5VIR6 Y_RNA.369-201ENST00000365568 117 ntBASIC0.78□□□□□ -2.28
VPS53Q5VIR6 RNA5SP222-201ENST00000411039 105 ntBASIC0.78□□□□□ -2.28
VPS53Q5VIR6 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.78□□□□□ -2.28
VPS53Q5VIR6 TRDV1-202ENST00000621643 102 ntBASIC0.78□□□□□ -2.28
VPS53Q5VIR6 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
VPS53Q5VIR6 Y_RNA.221-201ENST00000364248 96 ntBASIC0.77□□□□□ -2.29
VPS53Q5VIR6 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.77□□□□□ -2.29
VPS53Q5VIR6 RNU6-844P-201ENST00000517175 102 ntBASIC0.77□□□□□ -2.29
VPS53Q5VIR6 RNA5SP47-201ENST00000517230 109 ntBASIC0.77□□□□□ -2.29
VPS53Q5VIR6 MIR5582-201ENST00000579697 68 ntBASIC0.77□□□□□ -2.29
VPS53Q5VIR6 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.77□□□□□ -2.29
VPS53Q5VIR6 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
VPS53Q5VIR6 RNU6-957P-201ENST00000363652 99 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 RNU6-49P-201ENST00000384256 107 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 RNY1P7-201ENST00000384743 110 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 RNU6-519P-201ENST00000410590 108 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.76□□□□□ -2.29
VPS53Q5VIR6 AL161932.1-201ENST00000437408 146 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 RNU7-85P-201ENST00000458851 63 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 snoU13.18-201ENST00000459483 104 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 SCARNA16.5-201ENST00000517114 183 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 RNU7-161P-201ENST00000517289 62 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 AC244669.1-204ENST00000621564 178 ntBASIC0.76□□□□□ -2.29
VPS53Q5VIR6 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.75□□□□□ -2.29
VPS53Q5VIR6 SNORD4B-201ENST00000459083 72 ntBASIC0.75□□□□□ -2.29
VPS53Q5VIR6 RNA5SP436-201ENST00000516020 115 ntBASIC0.75□□□□□ -2.29
VPS53Q5VIR6 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.75□□□□□ -2.29
VPS53Q5VIR6 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
VPS53Q5VIR6 Y_RNA.43-201ENST00000362670 111 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 RNA5SP499-201ENST00000363982 119 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 SNORD115-44-201ENST00000365391 82 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 Y_RNA.609-201ENST00000410669 89 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 RNU6-75P-201ENST00000515944 104 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 RNU6-65P-201ENST00000516332 98 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 RNA5SP94-201ENST00000516917 108 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 MIR4536-1-201ENST00000583537 88 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 MTRNR2L2-201ENST00000604882 87 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 MIR6828-201ENST00000636181 60 ntBASIC0.74□□□□□ -2.29
VPS53Q5VIR6 MIR140-201ENST00000385282 100 ntBASIC0.73□□□□□ -2.29
VPS53Q5VIR6 AC026421.1-201ENST00000519101 163 ntBASIC0.73□□□□□ -2.29
VPS53Q5VIR6 MIR6515-201ENST00000619843 57 ntBASIC0.73□□□□□ -2.29
VPS53Q5VIR6 AC067863.3-201ENST00000624172 122 ntBASIC0.73□□□□□ -2.29
VPS53Q5VIR6 SNORA36.2-201ENST00000384004 127 ntBASIC0.72□□□□□ -2.29
VPS53Q5VIR6 SNORD116-22-201ENST00000384430 92 ntBASIC0.72□□□□□ -2.29
VPS53Q5VIR6 Y_RNA.596-201ENST00000410462 109 ntBASIC0.72□□□□□ -2.29
VPS53Q5VIR6 RNU7-104P-201ENST00000459398 79 ntBASIC0.72□□□□□ -2.29
VPS53Q5VIR6 RNU7-13P-201ENST00000516413 62 ntBASIC0.72□□□□□ -2.29
VPS53Q5VIR6 RNU6-1255P-201ENST00000363434 112 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms