Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Y_RNA.772-201ENST00000606692 102 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 Y_RNA.584-201ENST00000391090 114 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 Y_RNA.721-201ENST00000517207 102 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 RNU7-169P-201ENST00000459456 61 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 RNU6-861P-201ENST00000516745 106 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.84□□□□□ -2.86
CUX1P39880 RNU6-824P-201ENST00000363724 104 ntBASIC-2.85□□□□□ -2.87
CUX1P39880 SNORA79-201ENST00000408376 140 ntBASIC-2.85□□□□□ -2.87
CUX1P39880 Y_RNA.605-201ENST00000410577 105 ntBASIC-2.85□□□□□ -2.87
CUX1P39880 AC012531.4-201ENST00000616509 177 ntBASIC-2.85□□□□□ -2.87
CUX1P39880 AC090617.10-201ENST00000624308 134 ntBASIC-2.85□□□□□ -2.87
CUX1P39880 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.86□□□□□ -2.87
CUX1P39880 Y_RNA.526-201ENST00000384572 110 ntBASIC-2.86□□□□□ -2.87
CUX1P39880 MIR548A1-201ENST00000385041 97 ntBASIC-2.86□□□□□ -2.87
CUX1P39880 RNU6-864P-201ENST00000516256 108 ntBASIC-2.86□□□□□ -2.87
CUX1P39880 RNA5SP147-201ENST00000516493 109 ntBASIC-2.86□□□□□ -2.87
CUX1P39880 PISRT1.1-201ENST00000616930 107 ntBASIC-2.86□□□□□ -2.87
CUX1P39880 Y_RNA.8-201ENST00000362353 102 ntBASIC-2.87□□□□□ -2.87
CUX1P39880 RNU6-1013P-201ENST00000384180 107 ntBASIC-2.87□□□□□ -2.87
CUX1P39880 RNU6-307P-201ENST00000516743 106 ntBASIC-2.87□□□□□ -2.87
CUX1P39880 MIR4528-201ENST00000577763 90 ntBASIC-2.87□□□□□ -2.87
CUX1P39880 SNORD113-5-201ENST00000607261 78 ntBASIC-2.87□□□□□ -2.87
CUX1P39880 RNU1-115P-201ENST00000365329 160 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 SNORA75-201ENST00000384158 137 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 FGF7P7-201ENST00000514120 227 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 RNU6-803P-201ENST00000516034 102 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 AC013734.1-201ENST00000619329 111 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 RNU6-1177P-201ENST00000391058 104 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 SNORD116-25-201ENST00000516517 92 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 RNU6-521P-201ENST00000516663 105 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-2.88□□□□□ -2.87
CUX1P39880 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-2.88□□□□□ -2.87
CUX1P39880 AC040904.1-201ENST00000590850 223 ntBASIC-2.88□□□□□ -2.87
CUX1P39880 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 RNU6-478P-201ENST00000363904 110 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 Y_RNA.296-201ENST00000364930 108 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 RNU7-164P-201ENST00000459221 62 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 MTND2P14-201ENST00000482139 351 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 Y_RNA.708-201ENST00000516950 96 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-2.89□□□□□ -2.87
CUX1P39880 snoU13.17-201ENST00000458802 104 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 RNU6-273P-201ENST00000516937 96 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 SCARNA24.2-201ENST00000516968 130 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 RNU6-1213P-201ENST00000517075 94 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 Y_RNA.812-201ENST00000610788 101 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 Y_RNA.784-201ENST00000613803 101 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 Y_RNA.787-201ENST00000616522 101 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 Y_RNA.780-201ENST00000617336 101 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 U2.1-201ENST00000618978 145 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 Y_RNA.801-201ENST00000619005 101 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 U6.97-201ENST00000636904 101 ntBASIC-2.9□□□□□ -2.87
CUX1P39880 RNU6-593P-201ENST00000364716 112 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 Y_RNA.404-201ENST00000383978 102 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 AC138393.2-201ENST00000414742 246 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 RNU6-75P-201ENST00000515944 104 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 RNU6-518P-201ENST00000516056 96 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 RNU6-1281P-201ENST00000516223 105 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 RNU6-1234P-201ENST00000516877 103 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 MIR4536-1-201ENST00000583537 88 ntBASIC-2.91□□□□□ -2.88
CUX1P39880 SNORA63.2-201ENST00000362603 126 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 RNU6-1214P-201ENST00000363650 109 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 Y_RNA.409-201ENST00000383990 98 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 Y_RNA.418-201ENST00000384029 102 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 Y_RNA.512-201ENST00000384518 102 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 MIR521-2-201ENST00000384818 87 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 MT-TH-201ENST00000387441 69 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 AL731563.1-201ENST00000442202 214 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 RNU6-264P-201ENST00000517134 104 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-2.92□□□□□ -2.88
CUX1P39880 AC021443.1-201ENST00000604478 211 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.92□□□□□ -2.88
CUX1P39880 MTND1P1-201ENST00000445453 368 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 RNU7-4P-201ENST00000516961 62 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 AC138907.4-201ENST00000570107 226 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 Y_RNA.176-201ENST00000363815 109 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 RNU6-682P-201ENST00000363843 106 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 RNU6-937P-201ENST00000384325 106 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 Y_RNA.483-201ENST00000384380 101 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 RNU7-123P-201ENST00000515911 60 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 RNU6-453P-201ENST00000516819 85 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 MIR5693-201ENST00000577722 73 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 snoU18.1-201ENST00000629629 71 ntBASIC-2.93□□□□□ -2.88
CUX1P39880 Y_RNA.420-201ENST00000384043 110 ntBASIC-2.94□□□□□ -2.88
CUX1P39880 MIR513B-201ENST00000385136 84 ntBASIC-2.94□□□□□ -2.88
CUX1P39880 Y_RNA.793-201ENST00000411222 111 ntBASIC-2.94□□□□□ -2.88
CUX1P39880 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC-2.94□□□□□ -2.88
CUX1P39880 RBMX2P4-201ENST00000441256 376 ntBASIC-2.94□□□□□ -2.88
CUX1P39880 Z69908.1-201ENST00000622603 247 ntBASIC-2.94□□□□□ -2.88
CUX1P39880 Y_RNA.286-201ENST00000364813 102 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 SEPT14P3-201ENST00000439401 183 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 AL732372.2-207ENST00000445840 183 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 SEPT14P2-201ENST00000453405 183 ntBASIC-2.95□□□□□ -2.88
CUX1P39880 MTND3P22-201ENST00000510932 243 ntBASIC-2.95□□□□□ -2.88
Retrieved 100 of 98,524 protein–RNA pairs in 242.4 ms