Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Y_RNA.419-201ENST00000384041 102 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 SNORD38.2-201ENST00000384470 69 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 MIR519A2-201ENST00000384990 87 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 MIR451A-201ENST00000385059 72 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 RNU6-648P-201ENST00000410190 107 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 RNU7-66P-201ENST00000459469 62 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 RNU6-1228P-201ENST00000391014 107 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 Y_RNA.615-201ENST00000410769 117 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 RNU2-35P-201ENST00000516446 142 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 RNU6-1174P-201ENST00000517278 101 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.73□□□□□ -2.85
CUX1P39880 Y_RNA.560-201ENST00000384689 102 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 SNORA19.1-201ENST00000410656 129 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 RNU6-358P-201ENST00000516564 75 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-2.74□□□□□ -2.85
CUX1P39880 MIR4509-3-201ENST00000578671 94 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 MIR23C-201ENST00000579846 100 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 MIR4509-2-201ENST00000583920 94 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 MIR4509-1-201ENST00000618224 94 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 AL138825.1-201ENST00000618587 192 ntBASIC-2.74□□□□□ -2.85
CUX1P39880 Y_RNA.82-201ENST00000363000 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.92-201ENST00000363043 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.235-201ENST00000364412 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.306-201ENST00000365015 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.308-201ENST00000365043 101 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.312-201ENST00000365089 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.322-201ENST00000365151 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 RNU6-1283P-201ENST00000365314 105 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.389-201ENST00000383924 113 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 AC009161.1-201ENST00000417306 376 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.650-201ENST00000459002 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 AC019235.1-201ENST00000503847 207 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.777-201ENST00000516982 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.771-201ENST00000598668 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.789-201ENST00000622480 102 ntBASIC-2.75□□□□□ -2.85
CUX1P39880 Y_RNA.169-201ENST00000363745 96 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 RNU6-132P-201ENST00000383863 107 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 Y_RNA.441-201ENST00000384123 112 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 SNORD77B-201ENST00000391112 67 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 SEPT14P8-201ENST00000508026 178 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 RNU6-507P-201ENST00000516045 100 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 AC018645.2-201ENST00000609151 472 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 DLEU2_3.1-201ENST00000620005 73 ntBASIC-2.76□□□□□ -2.85
CUX1P39880 SNORA33.1-201ENST00000364957 130 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 Y_RNA.414-201ENST00000384011 101 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 Y_RNA.463-201ENST00000384271 102 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 Y_RNA.582-201ENST00000391023 95 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 Y_RNA.622-201ENST00000411091 108 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 HSPE1P25-201ENST00000455484 251 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 RNU6-566P-201ENST00000516790 107 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 Y_RNA.701-201ENST00000516812 110 ntBASIC-2.77□□□□□ -2.85
CUX1P39880 RNU6-246P-201ENST00000384702 107 ntBASIC-2.78□□□□□ -2.85
CUX1P39880 Y_RNA.569-201ENST00000384749 103 ntBASIC-2.78□□□□□ -2.85
CUX1P39880 RNU2-72P-201ENST00000411175 163 ntBASIC-2.78□□□□□ -2.85
CUX1P39880 RNU6-1088P-201ENST00000516850 104 ntBASIC-2.78□□□□□ -2.85
CUX1P39880 Y_RNA.3-201ENST00000362331 103 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 RNU6-260P-201ENST00000384092 107 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 RNU6-1068P-201ENST00000410958 103 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 RNU7-24P-201ENST00000458867 62 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 RNU6-1149P-201ENST00000516810 97 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.78□□□□□ -2.86
CUX1P39880 Y_RNA.24-201ENST00000362508 103 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 Y_RNA.505-201ENST00000384489 102 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 RNU6-1050P-201ENST00000410388 107 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 AC082651.2-201ENST00000496833 166 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 RNU7-154P-201ENST00000516194 62 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 RNU6-835P-201ENST00000516974 104 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 IGHVII-40-1-201ENST00000517316 58 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 MIR548AG1-201ENST00000579932 66 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 AC073114.1-201ENST00000612027 490 ntBASIC-2.79□□□□□ -2.86
CUX1P39880 Y_RNA.199-201ENST00000364014 102 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 Y_RNA.527-201ENST00000384573 102 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 Y_RNA.556-201ENST00000384677 113 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 MIR34C-201ENST00000384831 77 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 MT-TT-201ENST00000387460 66 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 RNU6-630P-201ENST00000391258 106 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 RNU6-911P-201ENST00000516523 104 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 AC022079.1-201ENST00000621546 602 ntBASIC-2.8□□□□□ -2.86
CUX1P39880 SNORD63-201ENST00000384262 68 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 Y_RNA.473-201ENST00000384333 102 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 RNY3P10-201ENST00000384764 102 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 AC097484.2-201ENST00000509147 251 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 RNU6-415P-201ENST00000516252 97 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 AC006006.1-201ENST00000603082 144 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 AC068137.3-201ENST00000639191 341 ntBASIC-2.81□□□□□ -2.86
CUX1P39880 Y_RNA.424-201ENST00000384063 103 ntBASIC-2.82□□□□□ -2.86
CUX1P39880 MIR520D-201ENST00000385002 87 ntBASIC-2.82□□□□□ -2.86
CUX1P39880 RNU6-332P-201ENST00000391193 108 ntBASIC-2.82□□□□□ -2.86
CUX1P39880 RNU6-141P-201ENST00000410499 105 ntBASIC-2.82□□□□□ -2.86
CUX1P39880 MRPS35P2-201ENST00000508242 191 ntBASIC-2.82□□□□□ -2.86
CUX1P39880 MIR3662-201ENST00000637030 95 ntBASIC-2.82□□□□□ -2.86
CUX1P39880 RNU6-694P-201ENST00000364071 147 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 RNU6-978P-201ENST00000364371 103 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 RNU6-616P-201ENST00000384353 107 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 MIR624-201ENST00000385217 97 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 Y_RNA.594-201ENST00000410373 140 ntBASIC-2.83□□□□□ -2.86
CUX1P39880 C8orf59P2-201ENST00000603441 271 ntBASIC-2.83□□□□□ -2.86
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms