Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.63□□□□□ -2.51
CLDN3O15551 AL603914.1-201ENST00000401964 204 ntBASIC-0.63□□□□□ -2.51
CLDN3O15551 SNORD75.1-201ENST00000408373 60 ntBASIC-0.63□□□□□ -2.51
CLDN3O15551 YWHAEP2-201ENST00000580066 112 ntBASIC-0.63□□□□□ -2.51
CLDN3O15551 AL137067.1-201ENST00000615933 120 ntBASIC-0.63□□□□□ -2.51
CLDN3O15551 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.64□□□□□ -2.51
CLDN3O15551 RNA5SP205-201ENST00000364653 136 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 RNU6-35P-201ENST00000384530 107 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 MIR516A2-201ENST00000384888 90 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 MIR516A1-201ENST00000385033 90 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 AC096720.1-201ENST00000604441 183 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 AC087741.2-201ENST00000619415 172 ntBASIC-0.64□□□□□ -2.51
CLDN3O15551 Y_RNA.350-201ENST00000365409 98 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 MIR34C-201ENST00000384831 77 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 MIR604-201ENST00000384880 94 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 Y_RNA.604-201ENST00000410574 102 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 Z95118.1-201ENST00000421372 247 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.65□□□□□ -2.51
CLDN3O15551 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 RNY1P11-201ENST00000363759 113 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 RNU4-84P-201ENST00000364200 139 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 RNU6-47P-201ENST00000383866 107 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 Y_RNA.459-201ENST00000384251 102 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 RNU6-758P-201ENST00000516292 89 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 MIR4460-201ENST00000577862 86 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 MIR3128-201ENST00000581957 66 ntBASIC-0.66□□□□□ -2.52
CLDN3O15551 SNORD114-29-201ENST00000364819 70 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 RNU6-239P-201ENST00000390990 99 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 RNU6-284P-201ENST00000411105 106 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 AC108081.1-201ENST00000604358 221 ntBASIC-0.67□□□□□ -2.52
CLDN3O15551 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 SNORD38.2-201ENST00000384470 69 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 SNORD37.2-201ENST00000391075 66 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 MIR1265-201ENST00000408444 86 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 MIR2113-201ENST00000459007 91 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 RNA5SP395-201ENST00000516567 118 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 RNU7-121P-201ENST00000516604 62 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 RNU7-6P-201ENST00000516845 62 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 AL590491.3-201ENST00000610731 82 ntBASIC-0.68□□□□□ -2.52
CLDN3O15551 MT-TQ-201ENST00000387372 72 ntBASIC-0.69□□□□□ -2.52
CLDN3O15551 RNU6-287P-201ENST00000516230 98 ntBASIC-0.69□□□□□ -2.52
CLDN3O15551 RNU6-521P-201ENST00000516663 105 ntBASIC-0.69□□□□□ -2.52
CLDN3O15551 RNU6-111P-201ENST00000517179 105 ntBASIC-0.69□□□□□ -2.52
CLDN3O15551 MIR3658-201ENST00000636291 56 ntBASIC-0.69□□□□□ -2.52
CLDN3O15551 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU6-738P-201ENST00000384531 106 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU6-735P-201ENST00000410612 107 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 MIR548AE1-201ENST00000583292 70 ntBASIC-0.7□□□□□ -2.52
CLDN3O15551 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 SNORA51.5-201ENST00000384126 131 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 MIR224-201ENST00000384889 81 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 MTCYBP9-201ENST00000431021 303 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 RNU6-175P-201ENST00000516896 107 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 AC062037.2-201ENST00000610137 73 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.812-201ENST00000610788 101 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.784-201ENST00000613803 101 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.787-201ENST00000616522 101 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.780-201ENST00000617336 101 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.801-201ENST00000619005 101 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 AL391099.1-201ENST00000624635 187 ntBASIC-0.71□□□□□ -2.52
CLDN3O15551 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.71□□□□□ -2.52
CLDN3O15551 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 SNORD115-19-201ENST00000363098 82 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 SNORD115-18-201ENST00000363293 82 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 SNORD114-11-201ENST00000363738 75 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 SNORD115-17-201ENST00000364612 82 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 SNORA20.1-201ENST00000364790 130 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 RNU6-154P-201ENST00000384306 106 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 MT-TY-201ENST00000387409 66 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 MIR1302-3-201ENST00000408128 138 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 AC108676.2-201ENST00000605225 163 ntBASIC-0.72□□□□□ -2.52
CLDN3O15551 SNORA63-201ENST00000363450 132 ntBASIC-0.73□□□□□ -2.53
CLDN3O15551 RNA5SP368-201ENST00000364298 116 ntBASIC-0.73□□□□□ -2.53
CLDN3O15551 MIR539-201ENST00000365690 78 ntBASIC-0.73□□□□□ -2.53
CLDN3O15551 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.73□□□□□ -2.53
CLDN3O15551 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.73□□□□□ -2.53
CLDN3O15551 MIR568-201ENST00000385036 95 ntBASIC-0.73□□□□□ -2.53
CLDN3O15551 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.73□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 218.1 ms