Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC138869.1-201ENST00000568623 124 ntBASIC0.46□□□□□ -2.34
NEK3P51956 AC091304.10-201ENST00000641554 121 ntBASIC0.46□□□□□ -2.34
NEK3P51956 SNORA36.1-201ENST00000363424 132 ntBASIC0.45□□□□□ -2.34
NEK3P51956 Y_RNA.170-201ENST00000363746 110 ntBASIC0.45□□□□□ -2.34
NEK3P51956 SNORD115-35-201ENST00000365122 82 ntBASIC0.45□□□□□ -2.34
NEK3P51956 RNU6-1327P-201ENST00000365302 105 ntBASIC0.45□□□□□ -2.34
NEK3P51956 Y_RNA.343-201ENST00000365354 112 ntBASIC0.45□□□□□ -2.34
NEK3P51956 Y_RNA.448-201ENST00000384185 108 ntBASIC0.45□□□□□ -2.34
NEK3P51956 MIR193B-201ENST00000384907 83 ntBASIC0.45□□□□□ -2.34
NEK3P51956 IGKV1-22-201ENST00000524313 326 ntBASIC0.45□□□□□ -2.34
NEK3P51956 RNU6-865P-201ENST00000364772 107 ntBASIC0.44□□□□□ -2.34
NEK3P51956 AC244505.6-201ENST00000452829 130 ntBASIC0.44□□□□□ -2.34
NEK3P51956 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
NEK3P51956 SNORD44.1-201ENST00000363202 61 ntBASIC0.43□□□□□ -2.34
NEK3P51956 Y_RNA.328-201ENST00000365208 113 ntBASIC0.43□□□□□ -2.34
NEK3P51956 RNU6-616P-201ENST00000384353 107 ntBASIC0.43□□□□□ -2.34
NEK3P51956 RNU7-6P-201ENST00000516845 62 ntBASIC0.43□□□□□ -2.34
NEK3P51956 Y_RNA.127-201ENST00000363386 109 ntBASIC0.42□□□□□ -2.34
NEK3P51956 VTRNA1-3-201ENST00000365645 89 ntBASIC0.42□□□□□ -2.34
NEK3P51956 MIR548I2-201ENST00000408348 149 ntBASIC0.42□□□□□ -2.34
NEK3P51956 RNU2-59P-201ENST00000410482 191 ntBASIC0.42□□□□□ -2.34
NEK3P51956 SNORA25.18-201ENST00000607153 114 ntBASIC0.42□□□□□ -2.34
NEK3P51956 AC087741.2-201ENST00000619415 172 ntBASIC0.42□□□□□ -2.34
NEK3P51956 RNU6-848P-201ENST00000515948 107 ntBASIC0.41□□□□□ -2.34
NEK3P51956 RNU6-617P-201ENST00000516147 107 ntBASIC0.41□□□□□ -2.34
NEK3P51956 RNU6-473P-201ENST00000516164 107 ntBASIC0.41□□□□□ -2.34
NEK3P51956 RNA5SP227-201ENST00000516184 113 ntBASIC0.41□□□□□ -2.34
NEK3P51956 RNU6-1049P-201ENST00000516414 107 ntBASIC0.41□□□□□ -2.34
NEK3P51956 RNU6-426P-201ENST00000516464 97 ntBASIC0.41□□□□□ -2.34
NEK3P51956 MIR6779-201ENST00000617283 64 ntBASIC0.41□□□□□ -2.34
NEK3P51956 MIR635-201ENST00000384830 98 ntBASIC0.4□□□□□ -2.35
NEK3P51956 MIR1273G-201ENST00000577677 100 ntBASIC0.4□□□□□ -2.35
NEK3P51956 AC244669.1-204ENST00000621564 178 ntBASIC0.4□□□□□ -2.35
NEK3P51956 SNORA40-201ENST00000388090 126 ntBASIC0.39□□□□□ -2.35
NEK3P51956 RNA5SP134-201ENST00000516492 96 ntBASIC0.39□□□□□ -2.35
NEK3P51956 MIR4500-201ENST00000579472 76 ntBASIC0.39□□□□□ -2.35
NEK3P51956 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.38□□□□□ -2.35
NEK3P51956 RNA5SP245-201ENST00000364239 121 ntBASIC0.38□□□□□ -2.35
NEK3P51956 MIR1263-201ENST00000408324 86 ntBASIC0.38□□□□□ -2.35
NEK3P51956 SUMO1P3-201ENST00000439961 304 ntBASIC0.38□□□□□ -2.35
NEK3P51956 SNRPGP12-201ENST00000449481 213 ntBASIC0.38□□□□□ -2.35
NEK3P51956 SNORA63.5-201ENST00000363548 123 ntBASIC0.37□□□□□ -2.35
NEK3P51956 Y_RNA.294-201ENST00000364916 102 ntBASIC0.37□□□□□ -2.35
NEK3P51956 Y_RNA.528-201ENST00000384575 108 ntBASIC0.37□□□□□ -2.35
NEK3P51956 Y_RNA.568-201ENST00000384742 113 ntBASIC0.37□□□□□ -2.35
NEK3P51956 MIR7107-201ENST00000611489 80 ntBASIC0.37□□□□□ -2.35
NEK3P51956 Y_RNA.205-201ENST00000364128 113 ntBASIC0.36□□□□□ -2.35
NEK3P51956 MIR539-201ENST00000365690 78 ntBASIC0.36□□□□□ -2.35
NEK3P51956 RNU6-1126P-201ENST00000384002 107 ntBASIC0.36□□□□□ -2.35
NEK3P51956 RNU6-571P-201ENST00000384128 107 ntBASIC0.36□□□□□ -2.35
NEK3P51956 SNORD38.2-201ENST00000384470 69 ntBASIC0.36□□□□□ -2.35
NEK3P51956 MIR519A1-201ENST00000385257 85 ntBASIC0.36□□□□□ -2.35
NEK3P51956 MTND4LP9-201ENST00000427694 174 ntBASIC0.36□□□□□ -2.35
NEK3P51956 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
NEK3P51956 MIR924-201ENST00000638017 53 ntBASIC0.36□□□□□ -2.35
NEK3P51956 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
NEK3P51956 SNORD115-24-201ENST00000363528 82 ntBASIC0.35□□□□□ -2.35
NEK3P51956 AC097635.1-201ENST00000450678 155 ntBASIC0.35□□□□□ -2.35
NEK3P51956 RNU6-255P-201ENST00000516957 105 ntBASIC0.35□□□□□ -2.35
NEK3P51956 MIR376B-201ENST00000614515 100 ntBASIC0.35□□□□□ -2.35
NEK3P51956 MIR103A1-201ENST00000362165 78 ntBASIC0.34□□□□□ -2.36
NEK3P51956 RNY4P6-201ENST00000363667 96 ntBASIC0.34□□□□□ -2.36
NEK3P51956 Y_RNA.506-201ENST00000384494 102 ntBASIC0.34□□□□□ -2.36
NEK3P51956 MIR548D2-201ENST00000384955 97 ntBASIC0.34□□□□□ -2.36
NEK3P51956 MT-TI-201ENST00000387365 69 ntBASIC0.34□□□□□ -2.36
NEK3P51956 MIR548I1-201ENST00000408810 149 ntBASIC0.34□□□□□ -2.36
NEK3P51956 Y_RNA.360-201ENST00000365512 102 ntBASIC0.33□□□□□ -2.36
NEK3P51956 RNU6-1307P-201ENST00000391012 103 ntBASIC0.33□□□□□ -2.36
NEK3P51956 RNU6-521P-201ENST00000516663 105 ntBASIC0.33□□□□□ -2.36
NEK3P51956 AC025166.1-201ENST00000612411 163 ntBASIC0.33□□□□□ -2.36
NEK3P51956 MIR330-201ENST00000362196 94 ntBASIC0.32□□□□□ -2.36
NEK3P51956 Y_RNA.49-201ENST00000362714 112 ntBASIC0.32□□□□□ -2.36
NEK3P51956 RNA5SP62-201ENST00000363457 110 ntBASIC0.32□□□□□ -2.36
NEK3P51956 SNORD58C-201ENST00000365223 64 ntBASIC0.32□□□□□ -2.36
NEK3P51956 Y_RNA.346-201ENST00000365385 112 ntBASIC0.32□□□□□ -2.36
NEK3P51956 RNU6-209P-201ENST00000384118 107 ntBASIC0.32□□□□□ -2.36
NEK3P51956 RNU6-170P-201ENST00000362832 104 ntBASIC0.31□□□□□ -2.36
NEK3P51956 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.31□□□□□ -2.36
NEK3P51956 RNU6-781P-201ENST00000516377 101 ntBASIC0.31□□□□□ -2.36
NEK3P51956 Y_RNA.773-201ENST00000607168 90 ntBASIC0.31□□□□□ -2.36
NEK3P51956 RNU6-907P-201ENST00000390924 102 ntBASIC0.3□□□□□ -2.36
NEK3P51956 RNU6-257P-201ENST00000410238 98 ntBASIC0.3□□□□□ -2.36
NEK3P51956 TRAJ51-201ENST00000504127 63 ntBASIC0.3□□□□□ -2.36
NEK3P51956 MIR4315-1-201ENST00000636800 73 ntBASIC0.3□□□□□ -2.36
NEK3P51956 MIR4315-2-201ENST00000640925 73 ntBASIC0.3□□□□□ -2.36
NEK3P51956 RNA5SP403-201ENST00000363598 108 ntBASIC0.29□□□□□ -2.36
NEK3P51956 BX276092.1-201ENST00000427368 251 ntBASIC0.29□□□□□ -2.36
NEK3P51956 RNA5SP272-201ENST00000516095 111 ntBASIC0.29□□□□□ -2.36
NEK3P51956 RNU6-1061P-201ENST00000516530 99 ntBASIC0.29□□□□□ -2.36
NEK3P51956 RNU6-1018P-201ENST00000516577 106 ntBASIC0.29□□□□□ -2.36
NEK3P51956 SNORA62.5-201ENST00000516634 120 ntBASIC0.29□□□□□ -2.36
NEK3P51956 RNU6-1234P-201ENST00000516877 103 ntBASIC0.29□□□□□ -2.36
NEK3P51956 MIR8087-201ENST00000612745 78 ntBASIC0.29□□□□□ -2.36
NEK3P51956 RNU6-235P-201ENST00000362644 107 ntBASIC0.28□□□□□ -2.36
NEK3P51956 RNU6-363P-201ENST00000362895 105 ntBASIC0.28□□□□□ -2.36
NEK3P51956 RNU4-67P-201ENST00000364569 141 ntBASIC0.28□□□□□ -2.36
NEK3P51956 RNU6-726P-201ENST00000364680 107 ntBASIC0.28□□□□□ -2.36
NEK3P51956 MIR34C-201ENST00000384831 77 ntBASIC0.28□□□□□ -2.36
NEK3P51956 MIR599-201ENST00000385069 95 ntBASIC0.28□□□□□ -2.36
NEK3P51956 AC069271.1-201ENST00000445577 156 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 203.1 ms