Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU6-1307P-201ENST00000391012 103 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 RNA5SP136-201ENST00000410906 107 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 RNU7-48P-201ENST00000458875 63 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 RNU7-2P-201ENST00000516096 62 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 RNA5SP94-201ENST00000516917 108 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 AC092634.7-201ENST00000621022 103 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 uc_338.16-201ENST00000621804 95 ntBASIC0.54□□□□□ -2.32
HOXC9P31274 Y_RNA.174-201ENST00000363781 105 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 RNY1P2-201ENST00000364820 117 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 RNU6-735P-201ENST00000410612 107 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 Y_RNA.703-201ENST00000516846 111 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 RNU6-971P-201ENST00000516920 106 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 AC018659.1-201ENST00000551083 169 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 AC087741.2-201ENST00000619415 172 ntBASIC0.53□□□□□ -2.32
HOXC9P31274 SNORA63.5-201ENST00000363548 123 ntBASIC0.52□□□□□ -2.33
HOXC9P31274 RNU6-865P-201ENST00000364772 107 ntBASIC0.52□□□□□ -2.33
HOXC9P31274 SNORD58C-201ENST00000365223 64 ntBASIC0.52□□□□□ -2.33
HOXC9P31274 MIR4500-201ENST00000579472 76 ntBASIC0.52□□□□□ -2.33
HOXC9P31274 Y_RNA.773-201ENST00000607168 90 ntBASIC0.52□□□□□ -2.33
HOXC9P31274 Y_RNA.98-201ENST00000363109 102 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 RNA5SP517-201ENST00000364724 117 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 Y_RNA.374-201ENST00000365606 101 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 RNU6-1062P-201ENST00000383908 107 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 AC025166.1-201ENST00000612411 163 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 AL109933.3-201ENST00000619095 188 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
HOXC9P31274 RNA5SP245-201ENST00000364239 121 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 SNORD115-35-201ENST00000365122 82 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 MIR539-201ENST00000365690 78 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 Y_RNA.586-201ENST00000391146 98 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 MIR1197-201ENST00000408818 88 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 RNU6-772P-201ENST00000516042 105 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 SNORA25.18-201ENST00000607153 114 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 MIR2909-201ENST00000617113 69 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 AP001362.1-201ENST00000625165 124 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 MIR1255B1-201ENST00000636325 63 ntBASIC0.5□□□□□ -2.33
HOXC9P31274 SNORD18A-201ENST00000363753 72 ntBASIC0.49□□□□□ -2.33
HOXC9P31274 Y_RNA.328-201ENST00000365208 113 ntBASIC0.49□□□□□ -2.33
HOXC9P31274 MIRLET7F2-201ENST00000385277 83 ntBASIC0.49□□□□□ -2.33
HOXC9P31274 RNU6-1234P-201ENST00000516877 103 ntBASIC0.49□□□□□ -2.33
HOXC9P31274 MIR376B-201ENST00000614515 100 ntBASIC0.49□□□□□ -2.33
HOXC9P31274 MTND5P18-201ENST00000445624 1801 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 SNORD115-19-201ENST00000363098 82 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 SNORD115-18-201ENST00000363293 82 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 RNU6-1229P-201ENST00000364295 107 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 SNORD115-17-201ENST00000364612 82 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 RNU6-716P-201ENST00000365621 103 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 RNU6-187P-201ENST00000384139 106 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 Y_RNA.525-201ENST00000384570 113 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 RNU6-429P-201ENST00000384582 108 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 SNORD71-201ENST00000411292 86 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 Y_RNA.630-201ENST00000411370 108 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 RNU7-107P-201ENST00000459121 61 ntBASIC0.48□□□□□ -2.33
HOXC9P31274 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.47□□□□□ -2.33
HOXC9P31274 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
HOXC9P31274 MIR548D2-201ENST00000384955 97 ntBASIC0.47□□□□□ -2.33
HOXC9P31274 BX276092.1-201ENST00000427368 251 ntBASIC0.47□□□□□ -2.33
HOXC9P31274 SNORA68.3-201ENST00000515906 83 ntBASIC0.47□□□□□ -2.33
HOXC9P31274 RNU6-521P-201ENST00000516663 105 ntBASIC0.47□□□□□ -2.33
HOXC9P31274 AL157777.2-201ENST00000258070 137 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 Y_RNA.127-201ENST00000363386 109 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 RNU6-746P-201ENST00000384112 109 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 SNORA8.2-201ENST00000384372 139 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 MIR34C-201ENST00000384831 77 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 SNORA7.5-201ENST00000410672 110 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 SNORA40.8-201ENST00000411034 126 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 SUMO1P3-201ENST00000439961 304 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 RN7SKP12-201ENST00000516275 143 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 RNU6-135P-201ENST00000516769 101 ntBASIC0.46□□□□□ -2.34
HOXC9P31274 Y_RNA.56-201ENST00000362798 112 ntBASIC0.45□□□□□ -2.34
HOXC9P31274 SNORA36.1-201ENST00000363424 132 ntBASIC0.45□□□□□ -2.34
HOXC9P31274 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
HOXC9P31274 MIR548H5-201ENST00000580314 60 ntBASIC0.45□□□□□ -2.34
HOXC9P31274 Y_RNA.346-201ENST00000365385 112 ntBASIC0.44□□□□□ -2.34
HOXC9P31274 MIR518A1-201ENST00000385068 85 ntBASIC0.44□□□□□ -2.34
HOXC9P31274 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
HOXC9P31274 MIR4514-201ENST00000581410 57 ntBASIC0.44□□□□□ -2.34
HOXC9P31274 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.44□□□□□ -2.34
HOXC9P31274 Y_RNA.49-201ENST00000362714 112 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 RNY4P6-201ENST00000363667 96 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 RNU4-67P-201ENST00000364569 141 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 Y_RNA.344-201ENST00000365381 112 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 SNORD28-201ENST00000384706 75 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 RNA5SP227-201ENST00000516184 113 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 RNA5SP268-201ENST00000516828 124 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 AC138869.1-201ENST00000568623 124 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 MIR4639-201ENST00000584938 69 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 AC244669.1-204ENST00000621564 178 ntBASIC0.43□□□□□ -2.34
HOXC9P31274 SNORD115-24-201ENST00000363528 82 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 Y_RNA.218-201ENST00000364218 104 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 Y_RNA.360-201ENST00000365512 102 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 MIR635-201ENST00000384830 98 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 SCARNA16.5-201ENST00000517114 183 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 RNA5SP47-201ENST00000517230 109 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 RNU7-10P-201ENST00000607194 63 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.42□□□□□ -2.34
HOXC9P31274 AL512310.12-203ENST00000640543 90 ntBASIC0.42□□□□□ -2.34
HOXC9P31274 Y_RNA.155-201ENST00000363632 101 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 728.8 ms