Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU2-55P-201ENST00000411146 174 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 Z83846.1-201ENST00000446798 265 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 RNA5SP153-201ENST00000516498 76 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 AC092794.2-201ENST00000620933 563 ntBASIC-3.33□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.380-201ENST00000365663 111 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.521-201ENST00000384560 114 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.570-201ENST00000384750 101 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 AL035461.1-201ENST00000421490 332 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 MIR2053-201ENST00000459295 91 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 FGF7P7-201ENST00000514120 227 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 MIR3672-201ENST00000584290 82 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 MIR1244-1-201ENST00000612829 85 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 MIR1244-3-201ENST00000635744 85 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 MIR1244-2-201ENST00000636449 85 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 MIR1244-4-202ENST00000636813 85 ntBASIC-3.34□□□□□ -2.94
CCDC88BA6NC98 SNORA33.1-201ENST00000364957 130 ntBASIC-3.35□□□□□ -2.94
CCDC88BA6NC98 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.35□□□□□ -2.94
CCDC88BA6NC98 MIR519A2-201ENST00000384990 87 ntBASIC-3.35□□□□□ -2.94
CCDC88BA6NC98 RNU6-191P-201ENST00000516295 94 ntBASIC-3.35□□□□□ -2.94
CCDC88BA6NC98 AC120024.2-201ENST00000576526 175 ntBASIC-3.35□□□□□ -2.94
CCDC88BA6NC98 MIR4790-201ENST00000577799 79 ntBASIC-3.35□□□□□ -2.94
CCDC88BA6NC98 RNU6-845P-201ENST00000362578 103 ntBASIC-3.35□□□□□ -2.95
CCDC88BA6NC98 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.35□□□□□ -2.95
CCDC88BA6NC98 SNORA19.1-201ENST00000410656 129 ntBASIC-3.35□□□□□ -2.95
CCDC88BA6NC98 RNU6-500P-201ENST00000362349 107 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.299-201ENST00000364973 94 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.301-201ENST00000364990 103 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 RNU6-636P-201ENST00000384598 107 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 RNU6-763P-201ENST00000390865 106 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 MTND2P39-201ENST00000457230 764 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 SEPT14P8-201ENST00000508026 178 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.691-201ENST00000516611 103 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 SCARNA15-202ENST00000516881 127 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 RNU6-570P-201ENST00000517051 105 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 AC013791.1-201ENST00000616619 62 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 DLEU2_3.1-201ENST00000620005 73 ntBASIC-3.36□□□□□ -2.95
CCDC88BA6NC98 RNU6-728P-201ENST00000365375 104 ntBASIC-3.37□□□□□ -2.95
CCDC88BA6NC98 SNORD38.2-201ENST00000384470 69 ntBASIC-3.37□□□□□ -2.95
CCDC88BA6NC98 MIR34C-201ENST00000384831 77 ntBASIC-3.37□□□□□ -2.95
CCDC88BA6NC98 SNORD77B-201ENST00000391112 67 ntBASIC-3.37□□□□□ -2.95
CCDC88BA6NC98 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-3.37□□□□□ -2.95
CCDC88BA6NC98 AC073869.6-201ENST00000640656 341 ntBASIC-3.37□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.3-201ENST00000362331 103 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 SNORD116-11-201ENST00000383882 92 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.396-201ENST00000383949 103 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 SNORD78.2-201ENST00000391076 69 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.622-201ENST00000411091 108 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 RNU6-261P-201ENST00000459506 102 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 RNA5SP147-201ENST00000516493 109 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 AL022161.1-201ENST00000604390 213 ntBASIC-3.38□□□□□ -2.95
CCDC88BA6NC98 RNU2-35P-201ENST00000516446 142 ntBASIC-3.39□□□□□ -2.95
CCDC88BA6NC98 RNU6-256P-201ENST00000516747 97 ntBASIC-3.39□□□□□ -2.95
CCDC88BA6NC98 MIR5692C2-201ENST00000577959 77 ntBASIC-3.39□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.781-201ENST00000620301 103 ntBASIC-3.39□□□□□ -2.95
CCDC88BA6NC98 RNU6-1152P-201ENST00000384576 107 ntBASIC-3.4□□□□□ -2.95
CCDC88BA6NC98 AC082651.2-201ENST00000496833 166 ntBASIC-3.4□□□□□ -2.95
CCDC88BA6NC98 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.4□□□□□ -2.95
CCDC88BA6NC98 U6.92-201ENST00000636464 89 ntBASIC-3.4□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.80-201ENST00000362996 102 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.153-201ENST00000363615 91 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.389-201ENST00000383924 113 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 RNU7-154P-201ENST00000516194 62 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 RNU6-1149P-201ENST00000516810 97 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 MIR548W-201ENST00000581970 74 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.778-201ENST00000620203 90 ntBASIC-3.41□□□□□ -2.95
CCDC88BA6NC98 Y_RNA.556-201ENST00000384677 113 ntBASIC-3.41□□□□□ -2.96
CCDC88BA6NC98 SNORA69.1-201ENST00000390904 137 ntBASIC-3.41□□□□□ -2.96
CCDC88BA6NC98 snoU13.10-201ENST00000459301 103 ntBASIC-3.41□□□□□ -2.96
CCDC88BA6NC98 RNU7-110P-201ENST00000516891 62 ntBASIC-3.41□□□□□ -2.96
CCDC88BA6NC98 RNU6-89P-201ENST00000606519 100 ntBASIC-3.41□□□□□ -2.96
CCDC88BA6NC98 AC097520.1-201ENST00000624435 385 ntBASIC-3.41□□□□□ -2.96
CCDC88BA6NC98 RNU6-260P-201ENST00000384092 107 ntBASIC-3.42□□□□□ -2.96
CCDC88BA6NC98 RNU6-297P-201ENST00000384636 107 ntBASIC-3.42□□□□□ -2.96
CCDC88BA6NC98 RNU6-1156P-201ENST00000410365 100 ntBASIC-3.42□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.701-201ENST00000516812 110 ntBASIC-3.42□□□□□ -2.96
CCDC88BA6NC98 RNU6-1174P-201ENST00000517278 101 ntBASIC-3.42□□□□□ -2.96
CCDC88BA6NC98 AL359880.1-201ENST00000621879 266 ntBASIC-3.42□□□□□ -2.96
CCDC88BA6NC98 RNU6-101P-201ENST00000410323 104 ntBASIC-3.43□□□□□ -2.96
CCDC88BA6NC98 AL593851.1-201ENST00000426171 157 ntBASIC-3.43□□□□□ -2.96
CCDC88BA6NC98 RNU6-415P-201ENST00000516252 97 ntBASIC-3.43□□□□□ -2.96
CCDC88BA6NC98 MTND3P12-201ENST00000559068 328 ntBASIC-3.43□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.222-201ENST00000364264 102 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.231-201ENST00000364358 102 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 SNORD115-31-201ENST00000365318 82 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 RNU6-608P-201ENST00000383927 104 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 RNU6-616P-201ENST00000384353 107 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 SNORD5.1-201ENST00000458800 75 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 RNU6-507P-201ENST00000516045 100 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 MIR6128-201ENST00000615528 109 ntBASIC-3.44□□□□□ -2.96
CCDC88BA6NC98 RNU6-563P-201ENST00000364872 108 ntBASIC-3.45□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.357-201ENST00000365487 109 ntBASIC-3.45□□□□□ -2.96
CCDC88BA6NC98 MIR548A1-201ENST00000385041 97 ntBASIC-3.45□□□□□ -2.96
CCDC88BA6NC98 MRPS35P2-201ENST00000508242 191 ntBASIC-3.45□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.655-201ENST00000515919 96 ntBASIC-3.45□□□□□ -2.96
CCDC88BA6NC98 AL138825.1-201ENST00000618587 192 ntBASIC-3.45□□□□□ -2.96
Retrieved 100 of 98,524 protein–RNA pairs in 209.1 ms