Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC022523.2-201ENST00000561045 150 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 MIR4491-201ENST00000581087 68 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 AL137067.1-201ENST00000615933 120 ntBASIC0.61□□□□□ -2.31
PDLIM3Q53GG5 RNA5SP331-201ENST00000364986 107 ntBASIC0.6□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.400-201ENST00000383963 111 ntBASIC0.6□□□□□ -2.31
PDLIM3Q53GG5 SNORA25.16-201ENST00000516741 121 ntBASIC0.6□□□□□ -2.31
PDLIM3Q53GG5 AP001328.1-201ENST00000528550 176 ntBASIC0.6□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.298-201ENST00000364960 107 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 RNA5SP117-201ENST00000365294 118 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 SNORD67.1-201ENST00000516618 108 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.692-201ENST00000516627 105 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 RNY4P20-201ENST00000516678 93 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 SNORD92-201ENST00000585078 85 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 MIR5087-201ENST00000635826 76 ntBASIC0.59□□□□□ -2.31
PDLIM3Q53GG5 Y_RNA.488-201ENST00000384403 102 ntBASIC0.58□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.555-201ENST00000384673 110 ntBASIC0.58□□□□□ -2.32
PDLIM3Q53GG5 RNU6-733P-201ENST00000410759 104 ntBASIC0.58□□□□□ -2.32
PDLIM3Q53GG5 RNU6-346P-201ENST00000516288 111 ntBASIC0.58□□□□□ -2.32
PDLIM3Q53GG5 RNU6-426P-201ENST00000516464 97 ntBASIC0.58□□□□□ -2.32
PDLIM3Q53GG5 MIR8066-201ENST00000617280 78 ntBASIC0.58□□□□□ -2.32
PDLIM3Q53GG5 MIR18A-201ENST00000362310 71 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.170-201ENST00000363746 110 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 RNY4P3-201ENST00000365254 95 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 RNU6-30P-201ENST00000384561 107 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 RNA5SP63-201ENST00000391225 112 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.588-201ENST00000391254 102 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 RNU6-448P-201ENST00000517052 107 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 RNU7-35P-201ENST00000517174 62 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 AC090897.1-201ENST00000580909 226 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 MIR6082-201ENST00000613604 109 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 U6.109-201ENST00000636749 87 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 MIR6759-201ENST00000638110 65 ntBASIC0.57□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.114-201ENST00000363265 113 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 RNA5SP133-201ENST00000363368 119 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 RNU6-1104P-201ENST00000384723 104 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 MIR329-2-201ENST00000385029 84 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 MIR569-201ENST00000385228 96 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 MIR1263-201ENST00000408324 86 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 AC096949.1-201ENST00000412047 152 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 AC002350.1-201ENST00000490759 375 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 RNU6-531P-201ENST00000516694 104 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 MTND5P34-201ENST00000568888 325 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 MIR3121-201ENST00000579680 77 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 AL359881.1-201ENST00000602916 267 ntBASIC0.56□□□□□ -2.32
PDLIM3Q53GG5 SNORD115-2-201ENST00000362842 82 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 SNORD115-20-201ENST00000365099 82 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 RNU6-907P-201ENST00000390924 102 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 MIR1912-201ENST00000410389 80 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 RNU4-54P-201ENST00000516428 129 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.697-201ENST00000516776 113 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 RNU6-255P-201ENST00000516957 105 ntBASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.42-201ENST00000362660 108 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 Y_RNA.180-201ENST00000363867 113 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 RNU6-209P-201ENST00000384118 107 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 MIR644A-201ENST00000385262 94 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 MIR140-201ENST00000385282 100 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 RNU4-69P-201ENST00000410677 143 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 MIR1270-201ENST00000459320 83 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 RNU6-1194P-201ENST00000516208 104 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 RNU7-137P-201ENST00000516788 62 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 IGKV1-22-201ENST00000524313 326 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 AC018659.1-201ENST00000551083 169 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 MIR5589-201ENST00000579442 60 ntBASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
PDLIM3Q53GG5 RNU6-235P-201ENST00000362644 107 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 SNORD77B-201ENST00000391112 67 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 AC092628.1-201ENST00000436250 252 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 RNU7-200P-201ENST00000516105 62 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 RNU7-6P-201ENST00000516845 62 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 MIR4514-201ENST00000581410 57 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.53□□□□□ -2.32
PDLIM3Q53GG5 RNU6-535P-201ENST00000384722 107 ntBASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 MT-TR-201ENST00000387439 65 ntBASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 SNORD100-201ENST00000408573 76 ntBASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 RN7SKP19-201ENST00000516016 252 ntBASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 RNU6-229P-201ENST00000516614 102 ntBASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 MIR3678-201ENST00000578455 94 ntBASIC0.52□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.464-201ENST00000384282 110 ntBASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 RNU6-616P-201ENST00000384353 107 ntBASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 RNU6-469P-201ENST00000516253 101 ntBASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 RNU6-1061P-201ENST00000516530 99 ntBASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 AC138749.4-201ENST00000563970 127 ntBASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
PDLIM3Q53GG5 MIR101-2-201ENST00000362195 79 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.32-201ENST00000362589 110 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 RNU6-774P-201ENST00000363238 107 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.119-201ENST00000363301 96 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.299-201ENST00000364973 94 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.343-201ENST00000365354 112 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.448-201ENST00000384185 108 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.567-201ENST00000384736 106 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 MIR206-201ENST00000384872 86 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 RNU6-1321P-201ENST00000390905 107 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms