Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-851P-201ENST00000384565 107 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 MIR3186-201ENST00000577404 85 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 MIR4264-201ENST00000583520 66 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 MIR8070-201ENST00000616510 88 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 SNORA50A-202ENST00000629536 136 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.03□□□□□ -1.92
COL9A1P20849 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.93
COL9A1P20849 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL9A1P20849 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL9A1P20849 Y_RNA.42-201ENST00000362660 108 ntBASIC3.02□□□□□ -1.93
COL9A1P20849 RNY4P3-201ENST00000365254 95 ntBASIC3.02□□□□□ -1.93
COL9A1P20849 RNU6-53P-201ENST00000365367 106 ntBASIC3.02□□□□□ -1.93
COL9A1P20849 MIR27B-201ENST00000385129 97 ntBASIC3.02□□□□□ -1.93
COL9A1P20849 MT-TF-201ENST00000387314 71 ntBASIC3.02□□□□□ -1.93
COL9A1P20849 RN7SKP223-201ENST00000410582 62 ntBASIC3.02□□□□□ -1.93
COL9A1P20849 RNU4-58P-201ENST00000363192 141 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 HMGN1P18-201ENST00000457642 277 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 AC003982.1-202ENST00000469928 248 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 RN7SL20P-201ENST00000488827 297 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 RNU6-1194P-201ENST00000516208 104 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 RNU1-143P-201ENST00000516296 146 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 SNORD111.1-201ENST00000516421 86 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 AC005520.4-201ENST00000604337 90 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 U1.23-201ENST00000610293 146 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 RNU1-68P-201ENST00000615382 146 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 AC007318.2-201ENST00000620999 243 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 U1.39-201ENST00000621562 146 ntBASIC3.01□□□□□ -1.93
COL9A1P20849 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL9A1P20849 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
COL9A1P20849 SNORD114-1-201ENST00000362705 72 ntBASIC3□□□□□ -1.93
COL9A1P20849 RNU6-957P-201ENST00000363652 99 ntBASIC3□□□□□ -1.93
COL9A1P20849 RNU6-681P-201ENST00000364012 104 ntBASIC3□□□□□ -1.93
COL9A1P20849 RNU6-1165P-201ENST00000410119 107 ntBASIC3□□□□□ -1.93
COL9A1P20849 RNU4-53P-201ENST00000410828 140 ntBASIC3□□□□□ -1.93
COL9A1P20849 RNU7-106P-201ENST00000459514 67 ntBASIC3□□□□□ -1.93
COL9A1P20849 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3□□□□□ -1.93
COL9A1P20849 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC3□□□□□ -1.93
COL9A1P20849 MIR6740-201ENST00000618268 113 ntBASIC3□□□□□ -1.93
COL9A1P20849 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.99□□□□□ -1.93
COL9A1P20849 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.99□□□□□ -1.93
COL9A1P20849 RNU6-499P-201ENST00000365615 107 ntBASIC2.99□□□□□ -1.93
COL9A1P20849 RNU6-154P-201ENST00000384306 106 ntBASIC2.99□□□□□ -1.93
COL9A1P20849 RNU6-205P-201ENST00000390858 107 ntBASIC2.99□□□□□ -1.93
COL9A1P20849 SNORD63B-201ENST00000411005 70 ntBASIC2.99□□□□□ -1.93
COL9A1P20849 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
COL9A1P20849 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
COL9A1P20849 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL9A1P20849 RNU6-340P-201ENST00000364005 107 ntBASIC2.98□□□□□ -1.93
COL9A1P20849 RNU6-1051P-201ENST00000365471 102 ntBASIC2.98□□□□□ -1.93
COL9A1P20849 MT-TN-201ENST00000387400 73 ntBASIC2.98□□□□□ -1.93
COL9A1P20849 SNORD90-201ENST00000391145 111 ntBASIC2.98□□□□□ -1.93
COL9A1P20849 HMGN2P35-201ENST00000412164 270 ntBASIC2.98□□□□□ -1.93
COL9A1P20849 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.98□□□□□ -1.93
COL9A1P20849 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.98□□□□□ -1.93
COL9A1P20849 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL9A1P20849 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
COL9A1P20849 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL9A1P20849 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL9A1P20849 RNU6-291P-201ENST00000384720 107 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 RNA5SP100-201ENST00000410903 110 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 RNA5SP59-201ENST00000410922 110 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 AC004965.1-201ENST00000413033 213 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.97□□□□□ -1.93
COL9A1P20849 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 AC073476.4-201ENST00000628409 72 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.97□□□□□ -1.93
COL9A1P20849 AC016717.2-201ENST00000609089 5141 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 AL021368.2-201ENST00000606125 5352 ntBASIC2.97□□□□□ -1.93
COL9A1P20849 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.93
COL9A1P20849 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
COL9A1P20849 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC2.96□□□□□ -1.94
COL9A1P20849 RNA5SP289-201ENST00000362332 137 ntBASIC2.96□□□□□ -1.94
COL9A1P20849 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.96□□□□□ -1.94
COL9A1P20849 snoU13.17-201ENST00000458802 104 ntBASIC2.96□□□□□ -1.94
COL9A1P20849 RNU7-10P-201ENST00000607194 63 ntBASIC2.96□□□□□ -1.94
COL9A1P20849 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL9A1P20849 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL9A1P20849 RNU6-330P-201ENST00000363015 107 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 SNORA25.4-201ENST00000363666 124 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 Y_RNA.207-201ENST00000364142 106 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 Y_RNA.239-201ENST00000364444 113 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 SNORD114-30-201ENST00000364448 72 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 RNU6-895P-201ENST00000384125 103 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 MIR194-1-201ENST00000384892 85 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 RNA5SP344-201ENST00000411081 104 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 RPS27P16-201ENST00000425758 201 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 RPL23AP42-201ENST00000471152 471 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 RNA5SP217-201ENST00000515959 91 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 MIR2115-201ENST00000516657 100 ntBASIC2.95□□□□□ -1.94
COL9A1P20849 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL9A1P20849 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
COL9A1P20849 MIR519A1-201ENST00000385257 85 ntBASIC2.94□□□□□ -1.94
COL9A1P20849 RNU6-630P-201ENST00000391258 106 ntBASIC2.94□□□□□ -1.94
COL9A1P20849 RNU7-62P-201ENST00000458856 62 ntBASIC2.94□□□□□ -1.94
COL9A1P20849 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.94□□□□□ -1.94
COL9A1P20849 RNU6-531P-201ENST00000516694 104 ntBASIC2.94□□□□□ -1.94
COL9A1P20849 MIR3675-201ENST00000583661 73 ntBASIC2.94□□□□□ -1.94
COL9A1P20849 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 191.9 ms