Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.21■□□□□ 0.51
LSM1O15116 AC079598.2-202ENST00000546624 1451 ntBASIC18.21■□□□□ 0.51
LSM1O15116 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM1O15116 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.21■□□□□ 0.51
LSM1O15116 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM1O15116 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LSM1O15116 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.21■□□□□ 0.51
LSM1O15116 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.21■□□□□ 0.51
LSM1O15116 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LSM1O15116 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
LSM1O15116 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
LSM1O15116 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LSM1O15116 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LSM1O15116 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LSM1O15116 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.2■□□□□ 0.5
LSM1O15116 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.2■□□□□ 0.5
LSM1O15116 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.2■□□□□ 0.5
LSM1O15116 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
LSM1O15116 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.2■□□□□ 0.5
LSM1O15116 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LSM1O15116 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.2■□□□□ 0.5
LSM1O15116 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 Z85996.1-201ENST00000494644 937 ntBASIC18.2■□□□□ 0.5
LSM1O15116 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.2■□□□□ 0.5
LSM1O15116 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.2■□□□□ 0.5
LSM1O15116 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.2■□□□□ 0.5
LSM1O15116 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LSM1O15116 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LSM1O15116 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LSM1O15116 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LSM1O15116 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.19■□□□□ 0.5
LSM1O15116 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.19■□□□□ 0.5
LSM1O15116 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.19■□□□□ 0.5
LSM1O15116 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
LSM1O15116 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.19■□□□□ 0.5
LSM1O15116 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.19■□□□□ 0.5
LSM1O15116 AL023875.1-201ENST00000640777 796 ntBASIC18.19■□□□□ 0.5
LSM1O15116 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.19■□□□□ 0.5
LSM1O15116 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LSM1O15116 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.19■□□□□ 0.5
LSM1O15116 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LSM1O15116 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.18■□□□□ 0.5
LSM1O15116 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
LSM1O15116 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LSM1O15116 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms