Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC003982.1-202ENST00000469928 248 ntBASIC5.34□□□□□ -1.55
SENP3Q9H4L4 AL645939.4-201ENST00000604495 135 ntBASIC5.34□□□□□ -1.55
SENP3Q9H4L4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC5.34□□□□□ -1.55
SENP3Q9H4L4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
SENP3Q9H4L4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SENP3Q9H4L4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
SENP3Q9H4L4 RNA5SP259-201ENST00000365541 109 ntBASIC5.33□□□□□ -1.56
SENP3Q9H4L4 MIR519E-201ENST00000385075 84 ntBASIC5.33□□□□□ -1.56
SENP3Q9H4L4 RNVU1-4-201ENST00000612985 164 ntBASIC5.33□□□□□ -1.56
SENP3Q9H4L4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC5.32□□□□□ -1.56
SENP3Q9H4L4 RNU1-18P-201ENST00000363062 164 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 SNORA80A-201ENST00000363922 136 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 SNORD116-16-201ENST00000384533 92 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SENP3Q9H4L4 RNU6-1246P-201ENST00000391064 107 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 SNORA3C-201ENST00000408792 125 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 SNORD83.1-201ENST00000411362 77 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 AC138207.3-201ENST00000585289 166 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 MIR7112-201ENST00000616126 65 ntBASIC5.32□□□□□ -1.56
SENP3Q9H4L4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC5.32□□□□□ -1.56
SENP3Q9H4L4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SENP3Q9H4L4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SENP3Q9H4L4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC5.31□□□□□ -1.56
SENP3Q9H4L4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SENP3Q9H4L4 SNORA5B-201ENST00000363786 132 ntBASIC5.31□□□□□ -1.56
SENP3Q9H4L4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC5.31□□□□□ -1.56
SENP3Q9H4L4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC5.31□□□□□ -1.56
SENP3Q9H4L4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.31□□□□□ -1.56
SENP3Q9H4L4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
SENP3Q9H4L4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SENP3Q9H4L4 RNU4-35P-201ENST00000362588 141 ntBASIC5.3□□□□□ -1.56
SENP3Q9H4L4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.3□□□□□ -1.56
SENP3Q9H4L4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
SENP3Q9H4L4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.29□□□□□ -1.56
SENP3Q9H4L4 MIR103A2-201ENST00000362154 78 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 MIR125B2-201ENST00000385128 89 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 RNU6-360P-201ENST00000390944 104 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 SNORA48.8-201ENST00000391324 134 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 RNU2-27P-201ENST00000516185 142 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 MIR548AL-201ENST00000578416 97 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 MIR4472-2-201ENST00000582069 67 ntBASIC5.29□□□□□ -1.56
SENP3Q9H4L4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SENP3Q9H4L4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SENP3Q9H4L4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC5.28□□□□□ -1.56
SENP3Q9H4L4 AP003716.2-201ENST00000528260 108 ntBASIC5.28□□□□□ -1.56
SENP3Q9H4L4 MIR3936-201ENST00000584304 110 ntBASIC5.28□□□□□ -1.56
SENP3Q9H4L4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SENP3Q9H4L4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC5.27□□□□□ -1.57
SENP3Q9H4L4 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SENP3Q9H4L4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SENP3Q9H4L4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC5.27□□□□□ -1.57
SENP3Q9H4L4 RNA5SP383-201ENST00000362934 120 ntBASIC5.27□□□□□ -1.57
SENP3Q9H4L4 Y_RNA.125-201ENST00000363371 111 ntBASIC5.27□□□□□ -1.57
SENP3Q9H4L4 RPS27P29-201ENST00000463110 252 ntBASIC5.27□□□□□ -1.57
SENP3Q9H4L4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC5.27□□□□□ -1.57
SENP3Q9H4L4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SENP3Q9H4L4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SENP3Q9H4L4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SENP3Q9H4L4 MIR199A2-201ENST00000385289 110 ntBASIC5.26□□□□□ -1.57
SENP3Q9H4L4 MIR1261-201ENST00000408659 82 ntBASIC5.26□□□□□ -1.57
SENP3Q9H4L4 HLA-N-201ENST00000437516 135 ntBASIC5.26□□□□□ -1.57
SENP3Q9H4L4 RNU6-947P-201ENST00000516264 106 ntBASIC5.26□□□□□ -1.57
SENP3Q9H4L4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SENP3Q9H4L4 MAPK10-286ENST00000641208 8747 ntBASIC5.26□□□□□ -1.57
SENP3Q9H4L4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 MIR194-1-201ENST00000384892 85 ntBASIC5.25□□□□□ -1.57
SENP3Q9H4L4 RNA5SP341-201ENST00000516261 117 ntBASIC5.25□□□□□ -1.57
SENP3Q9H4L4 RNU6-548P-201ENST00000517083 115 ntBASIC5.25□□□□□ -1.57
SENP3Q9H4L4 MIR4325-201ENST00000583049 90 ntBASIC5.25□□□□□ -1.57
SENP3Q9H4L4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
SENP3Q9H4L4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 RNA5SP403-201ENST00000363598 108 ntBASIC5.24□□□□□ -1.57
SENP3Q9H4L4 SNORA31.11-201ENST00000516528 139 ntBASIC5.24□□□□□ -1.57
SENP3Q9H4L4 MIR4490-201ENST00000582647 84 ntBASIC5.24□□□□□ -1.57
SENP3Q9H4L4 AL033523.1-201ENST00000605153 153 ntBASIC5.24□□□□□ -1.57
SENP3Q9H4L4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SENP3Q9H4L4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SENP3Q9H4L4 SNORA33.1-201ENST00000364957 130 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 MIR518A2-201ENST00000384966 87 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 MIR1271-201ENST00000408537 86 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 AC108210.2-201ENST00000503681 201 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 RNU1-41P-201ENST00000516161 162 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 RNU1-48P-201ENST00000516400 162 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 MIR4672-201ENST00000583126 81 ntBASIC5.23□□□□□ -1.57
SENP3Q9H4L4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC5.23□□□□□ -1.57
SENP3Q9H4L4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3Q9H4L4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SENP3Q9H4L4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SENP3Q9H4L4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 453.8 ms