Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL391516.1-201ENST00000554380 2449 ntBASIC1.08□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.298-201ENST00000364960 107 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 SNORA18-201ENST00000384416 132 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.531-201ENST00000384589 121 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-1237P-201ENST00000384777 107 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 MIR548M-201ENST00000408260 86 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-257P-201ENST00000410238 98 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 SNORD83.1-201ENST00000411362 77 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 AL354695.1-201ENST00000427935 228 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 RNU7-123P-201ENST00000515911 60 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 RNU1-92P-201ENST00000517017 135 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.07□□□□□ -2.24
CCDC28AQ8IWP9 MIR1-1-201ENST00000362147 71 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 MIR30D-201ENST00000362283 70 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.280-201ENST00000364765 112 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-60P-201ENST00000364792 103 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 SNORD50.2-201ENST00000365465 70 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 MIR613-201ENST00000385248 95 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 MIR1827-201ENST00000408549 66 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 RPS26P5-201ENST00000418544 335 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 AL512326.2-201ENST00000426359 151 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 U7.7-201ENST00000459276 60 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 SNORD13-201ENST00000459299 104 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 PDCD5P2-201ENST00000507570 312 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-1110P-201ENST00000516462 101 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 RNA5SP33-201ENST00000516687 98 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 MIR4771-2-201ENST00000577758 74 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 MIR4771-1-201ENST00000582617 74 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 SNORA4-201ENST00000584302 138 ntBASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.06□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.294-201ENST00000364916 102 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.470-201ENST00000384307 117 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-342P-201ENST00000384521 104 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 MIR100-201ENST00000385259 80 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 AL158147.1-201ENST00000443970 75 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 RPL39P25-201ENST00000449384 154 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 RNY4P20-201ENST00000516678 93 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 AC141846.1-201ENST00000568348 142 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.299-201ENST00000364973 94 ntBASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 MIR539-201ENST00000365690 78 ntBASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 SNORD89-201ENST00000390981 114 ntBASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 RNU6-1086P-201ENST00000410930 100 ntBASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 RNA5SP255-201ENST00000516370 107 ntBASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 ZNF209P-201ENST00000593450 2304 ntBASIC1.04□□□□□ -2.24
CCDC28AQ8IWP9 Y_RNA.586-201ENST00000391146 98 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 MIR1257-201ENST00000408490 117 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 AL591806.2-201ENST00000433122 173 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 AC108210.2-201ENST00000503681 201 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 UBL5P1-201ENST00000507979 193 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 RN7SKP19-201ENST00000516016 252 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 AC025627.3-201ENST00000582078 182 ntBASIC1.03□□□□□ -2.24
CCDC28AQ8IWP9 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.02□□□□□ -2.25
CCDC28AQ8IWP9 RNU7-185P-201ENST00000459215 60 ntBASIC1.02□□□□□ -2.25
CCDC28AQ8IWP9 RNU7-35P-201ENST00000517174 62 ntBASIC1.02□□□□□ -2.25
CCDC28AQ8IWP9 AC023934.1-201ENST00000574529 2389 ntBASIC1.02□□□□□ -2.25
CCDC28AQ8IWP9 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
CCDC28AQ8IWP9 AL512598.1-201ENST00000610158 273 ntBASIC1.02□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-369P-201ENST00000362515 102 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-704P-201ENST00000364162 103 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-949P-201ENST00000384040 107 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-187P-201ENST00000384139 106 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 RNA5SP136-201ENST00000410906 107 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-977P-201ENST00000516411 103 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 IGKV1-22-201ENST00000524313 326 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 MIR4676-201ENST00000583078 72 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 MIR548AE2-201ENST00000583456 67 ntBASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
CCDC28AQ8IWP9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1□□□□□ -2.25
CCDC28AQ8IWP9 RNU1-17P-201ENST00000363022 152 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 SNORA32-201ENST00000384072 121 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 SNORA11.2-201ENST00000408318 127 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 RNU4-69P-201ENST00000410677 143 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 Y_RNA.617-201ENST00000410920 90 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 AC015818.7-201ENST00000428754 109 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 AC087499.7-201ENST00000441958 109 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-1211P-201ENST00000459179 105 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 RNU7-79P-201ENST00000516082 62 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 AL353997.5-201ENST00000618886 171 ntBASIC1□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-235P-201ENST00000362644 107 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 RNY1P13-201ENST00000365030 105 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 snoU13.23-201ENST00000458863 104 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 AL645939.4-201ENST00000604495 135 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 AC020891.4-201ENST00000605745 93 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.99□□□□□ -2.25
CCDC28AQ8IWP9 MIR520F-201ENST00000384824 87 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 MIR125B2-201ENST00000385128 89 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 SNORD105-201ENST00000386910 85 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 SNORD77B-201ENST00000391112 67 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 SNORD93-201ENST00000408813 74 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 SUMO1P3-201ENST00000439961 304 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 171.7 ms