Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA22C-201ENST00000384614 134 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
NKX3-1Q99801 SNORD12-201ENST00000391002 90 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 RNU6-1190P-201ENST00000410811 104 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 AC006461.1-201ENST00000412637 326 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 HMGN1P33-201ENST00000432945 451 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 RPS29P24-201ENST00000486345 171 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 RNA5SP102-201ENST00000516865 106 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 MRPS18CP4-201ENST00000535821 231 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 AC131055.1-201ENST00000584626 316 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 SNORD114-21-201ENST00000606412 72 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 AC012676.2-201ENST00000619258 186 ntBASIC0.93□□□□□ -2.26
NKX3-1Q99801 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.93□□□□□ -2.26
NKX3-1Q99801 RNU6-200P-201ENST00000364743 107 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 Y_RNA.410-201ENST00000383992 113 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 Y_RNA.435-201ENST00000384095 112 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 RNU6-125P-201ENST00000384505 107 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 MIR19B1-201ENST00000384829 87 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 SEPT7P4-201ENST00000437076 306 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 RNU7-90P-201ENST00000459216 62 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.92□□□□□ -2.26
NKX3-1Q99801 SNORD116-25-201ENST00000516517 92 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 AC036111.3-201ENST00000526389 112 ntBASIC0.92□□□□□ -2.26
NKX3-1Q99801 AC244023.1-201ENST00000426884 112 ntBASIC0.91□□□□□ -2.26
NKX3-1Q99801 snoU13.16-201ENST00000459350 104 ntBASIC0.91□□□□□ -2.26
NKX3-1Q99801 RNU7-45P-201ENST00000459460 63 ntBASIC0.91□□□□□ -2.26
NKX3-1Q99801 AL365205.2-201ENST00000594586 68 ntBASIC0.91□□□□□ -2.26
NKX3-1Q99801 AC242498.1-201ENST00000604134 111 ntBASIC0.91□□□□□ -2.26
NKX3-1Q99801 MIR8055-201ENST00000610739 97 ntBASIC0.91□□□□□ -2.26
NKX3-1Q99801 Y_RNA.191-201ENST00000363972 113 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 Y_RNA.257-201ENST00000364596 102 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 Y_RNA.351-201ENST00000365436 96 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 Y_RNA.542-201ENST00000384641 111 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 Y_RNA.793-201ENST00000411222 111 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 AL035398.1-201ENST00000430869 322 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 RNU7-73P-201ENST00000458743 63 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 RNU2-11P-201ENST00000459191 187 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 RNU6-998P-201ENST00000515894 101 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 RNU11-2P-201ENST00000516898 142 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 AP002392.1-201ENST00000537692 208 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 MIR4431-201ENST00000579990 94 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 MIR5197-201ENST00000583721 112 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 RNU6-94P-201ENST00000607728 107 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.9□□□□□ -2.27
NKX3-1Q99801 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
NKX3-1Q99801 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.89□□□□□ -2.27
NKX3-1Q99801 RNU6-396P-201ENST00000365369 105 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 RNU6-1292P-201ENST00000383856 107 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 RNU6-205P-201ENST00000390858 107 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 MRPL35P3-201ENST00000421557 364 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 RNU6-861P-201ENST00000516745 106 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 AL078603.1-201ENST00000603824 313 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 MIR6504-201ENST00000613520 61 ntBASIC0.89□□□□□ -2.27
NKX3-1Q99801 RNU6-1187P-201ENST00000364771 110 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 Y_RNA.521-201ENST00000384560 114 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 RNU6-768P-201ENST00000384683 107 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 MIR1276-201ENST00000408707 83 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 RNU6-613P-201ENST00000410412 108 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 MTND5P15-201ENST00000434246 349 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.88□□□□□ -2.27
NKX3-1Q99801 snoU13.21-201ENST00000459368 105 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 RNU7-96P-201ENST00000459535 64 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 MIR2115-201ENST00000516657 100 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 MIR4452-201ENST00000583004 71 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 AL020996.3-201ENST00000606617 222 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 AC090425.1-201ENST00000610007 140 ntBASIC0.88□□□□□ -2.27
NKX3-1Q99801 RNU6-1082P-201ENST00000364574 107 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 SNORA2B-201ENST00000384583 137 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 RNU5E-9P-201ENST00000411164 104 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.87□□□□□ -2.27
NKX3-1Q99801 UBL5P1-201ENST00000507979 193 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 RNU7-53P-201ENST00000516705 60 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 SCARNA15-202ENST00000516881 127 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.87□□□□□ -2.27
NKX3-1Q99801 AC072026.1-201ENST00000605023 201 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 AC106800.4-201ENST00000614905 153 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 MTND5P32-201ENST00000560711 1802 ntBASIC0.87□□□□□ -2.27
NKX3-1Q99801 RNY1P11-201ENST00000363759 113 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 RNU6-682P-201ENST00000363843 106 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 RNU6-312P-201ENST00000364629 107 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 SNORD113.3-201ENST00000364630 78 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 MIR548I3-201ENST00000408378 149 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 AC074198.2-201ENST00000508153 258 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 SNORA81.3-201ENST00000517283 198 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 AC103810.9-201ENST00000606688 112 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 uc_338.6-201ENST00000613544 171 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 AC004792.1-201ENST00000614523 137 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 MIR6734-201ENST00000621166 68 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 AC091932.4-201ENST00000623386 200 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 Z97988.1-201ENST00000637697 135 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 AL596211.1-201ENST00000569873 2277 ntBASIC0.86□□□□□ -2.27
NKX3-1Q99801 SNORD114-22-201ENST00000365423 72 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 SNORA26.6-201ENST00000391256 115 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 MIR942-201ENST00000401111 86 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 RNA5SP127-201ENST00000411051 133 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 RNU6-602P-201ENST00000411155 105 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 RNU7-120P-201ENST00000459334 63 ntBASIC0.85□□□□□ -2.27
NKX3-1Q99801 RNU6-1149P-201ENST00000516810 97 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 175.3 ms