Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
HOXC9P31274 RNU6-910P-201ENST00000390844 107 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 SNORA79-201ENST00000408376 140 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 AC245047.7-201ENST00000440265 293 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 snoU13.25-201ENST00000458945 104 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 RNU6-504P-201ENST00000516568 104 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 AC109810.1-201ENST00000534066 224 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 AC009779.6-201ENST00000603972 165 ntBASIC1.21□□□□□ -2.22
HOXC9P31274 Y_RNA.66-201ENST00000362862 102 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 Y_RNA.241-201ENST00000364470 117 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 SNORA1.2-201ENST00000365189 134 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 Y_RNA.515-201ENST00000384535 112 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 MIR548A2-201ENST00000384956 97 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 RNU6-578P-201ENST00000390980 103 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 SNORA31.4-201ENST00000516049 129 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 AP000942.4-201ENST00000604811 241 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 AC108706.1-201ENST00000611053 297 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 AL442644.1-201ENST00000454390 3105 ntBASIC1.2□□□□□ -2.22
HOXC9P31274 RNU6-888P-201ENST00000363010 101 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 RNA5SP48-201ENST00000363969 126 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 Y_RNA.274-201ENST00000364714 101 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 RNU6-47P-201ENST00000383866 107 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 SNORD24-201ENST00000383884 75 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 MIR618-201ENST00000385287 98 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 RNU6-1054P-201ENST00000411293 104 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 AL133373.1-201ENST00000497098 94 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 RNA5SP153-201ENST00000516498 76 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 RNU6-197P-201ENST00000516680 100 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 AL022345.2-201ENST00000606307 135 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
HOXC9P31274 MIR4251-201ENST00000635819 61 ntBASIC1.19□□□□□ -2.22
HOXC9P31274 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.19□□□□□ -2.22
HOXC9P31274 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
HOXC9P31274 MIR103A2-201ENST00000362154 78 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 Y_RNA.23-201ENST00000362496 106 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 Y_RNA.37-201ENST00000362606 108 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 RNU6-1020P-201ENST00000363684 107 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 SNORA51.10-201ENST00000384418 136 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 RNU6-342P-201ENST00000384521 104 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 Y_RNA.552-201ENST00000384665 112 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 RNU6-1067P-201ENST00000384752 107 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 MT-TG-201ENST00000387429 68 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 SNORA70.22-201ENST00000517160 124 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 FAM71BP1-201ENST00000604431 523 ntBASIC1.18□□□□□ -2.22
HOXC9P31274 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
HOXC9P31274 Y_RNA.121-201ENST00000363309 113 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 Y_RNA.297-201ENST00000364950 91 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 Y_RNA.363-201ENST00000365529 113 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 SNORA25-201ENST00000384384 134 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 SNORD36C-201ENST00000516733 66 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 Z83818.1-201ENST00000603584 150 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 MIR4791-201ENST00000607666 84 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 AC141273.2-201ENST00000618989 130 ntBASIC1.17□□□□□ -2.22
HOXC9P31274 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.16□□□□□ -2.22
HOXC9P31274 RNA5SP264-201ENST00000363115 107 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 RNU1-133P-201ENST00000364867 167 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 Y_RNA.330-201ENST00000365230 109 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 Y_RNA.494-201ENST00000384432 111 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 RNU6-918P-201ENST00000391219 106 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 RNU6-847P-201ENST00000411115 108 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXC9P31274 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.16□□□□□ -2.22
HOXC9P31274 AF228730.3-201ENST00000436691 102 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 AC107297.1-201ENST00000459991 176 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 RNU7-40P-201ENST00000516397 64 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXC9P31274 AC022559.1-201ENST00000520905 205 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 AP003484.1-201ENST00000530974 250 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 AC097639.2-201ENST00000603159 172 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 AC243994.1-201ENST00000618627 109 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 U6.106-201ENST00000636360 105 ntBASIC1.16□□□□□ -2.22
HOXC9P31274 SNORD114-26-201ENST00000363543 72 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 RNU6-275P-201ENST00000364910 107 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 Y_RNA.412-201ENST00000384001 104 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 SNORA1-201ENST00000384107 130 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 SNORA75.2-201ENST00000391138 150 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 SNORA75.3-201ENST00000391231 150 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 RNU6-938P-201ENST00000411285 103 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 AC087499.4-201ENST00000448505 178 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 RNU7-67P-201ENST00000459003 62 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 SNORA18.4-201ENST00000516440 124 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 MIR3129-201ENST00000581095 76 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 AC134878.1-201ENST00000619901 243 ntBASIC1.15□□□□□ -2.23
HOXC9P31274 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.15□□□□□ -2.23
HOXC9P31274 SNORD115-34-201ENST00000362441 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-12-201ENST00000362583 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-29-201ENST00000362834 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-9-201ENST00000362912 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-21-201ENST00000362963 81 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-14-201ENST00000363090 81 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-13-201ENST00000363358 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-41-201ENST00000363608 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-11-201ENST00000363616 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-5-201ENST00000363633 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-39-201ENST00000363694 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-4-201ENST00000363810 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-16-201ENST00000363887 82 ntBASIC1.14□□□□□ -2.23
HOXC9P31274 SNORD115-6-201ENST00000363942 82 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 213.9 ms